RNA–Protein interactions for RNA: ENST00000454350.5

UBE2D4-208, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 2

Gene UBE2D4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-208ENST00000454350 NWD1Q149M9 1564 aa28.36■■■□□ 2.13
UBE2D4-208ENST00000454350 SLC26A8Q96RN1 970 aa28.35■■■□□ 2.13
UBE2D4-208ENST00000454350 NUP155O75694 1391 aa28.35■■■□□ 2.13
UBE2D4-208ENST00000454350 CHD2O14647 1828 aaKnown RBP28.33■■■□□ 2.13
UBE2D4-208ENST00000454350 RIMS2Q9UQ26 1411 aa28.33■■■□□ 2.13
UBE2D4-208ENST00000454350 KCNA6P17658 529 aa28.32■■■□□ 2.12
UBE2D4-208ENST00000454350 PLEKHG1Q9ULL1 1385 aa28.3■■■□□ 2.12
UBE2D4-208ENST00000454350 SPHKAPQ2M3C7 1700 aa28.29■■■□□ 2.12
UBE2D4-208ENST00000454350 MED1Q15648 1581 aaPredicted RBP28.28■■■□□ 2.12
UBE2D4-208ENST00000454350 TMEM94Q12767 1356 aa28.27■■■□□ 2.12
UBE2D4-208ENST00000454350 NKTRP30414 1462 aaKnown RBP28.27■■■□□ 2.12
UBE2D4-208ENST00000454350 NAIPQ13075 1403 aa28.24■■■□□ 2.11
UBE2D4-208ENST00000454350 ADAMTS13Q76LX8 1427 aa28.22■■■□□ 2.11
UBE2D4-208ENST00000454350 SENP3Q9H4L4 574 aaPredicted RBP28.22■■■□□ 2.11
UBE2D4-208ENST00000454350 CHGAP10645 457 aaKnown RBP28.2■■■□□ 2.1
UBE2D4-208ENST00000454350 RBM33Q96EV2 1170 aaKnown RBP28.2■■■□□ 2.1
UBE2D4-208ENST00000454350 HDGFP51858 240 aaKnown RBP28.19■■■□□ 2.1
UBE2D4-208ENST00000454350 PROSER2Q86WR7 435 aaPredicted RBP28.19■■■□□ 2.1
UBE2D4-208ENST00000454350 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.18■■■□□ 2.1
UBE2D4-208ENST00000454350 TBX22Q9Y458 520 aa28.18■■■□□ 2.1
UBE2D4-208ENST00000454350 DIP2AQ14689 1571 aa28.17■■■□□ 2.1
UBE2D4-208ENST00000454350 PPP1R15AO75807 674 aaPredicted RBP28.17■■■□□ 2.1
UBE2D4-208ENST00000454350 BCANQ96GW7 911 aa28.17■■■□□ 2.1
UBE2D4-208ENST00000454350 FAM135BQ49AJ0 1406 aa28.17■■■□□ 2.1
UBE2D4-208ENST00000454350 SOCS7O14512 581 aa28.16■■■□□ 2.1
UBE2D4-208ENST00000454350 NUTM2DQ5VT03 806 aaPredicted RBP28.16■■■□□ 2.1
UBE2D4-208ENST00000454350 CLTCL1P53675 1640 aa28.15■■■□□ 2.1
UBE2D4-208ENST00000454350 NRXN3Q9Y4C0 1643 aa28.14■■■□□ 2.1
UBE2D4-208ENST00000454350 ROBO1Q9Y6N7 1651 aa28.14■■■□□ 2.1
UBE2D4-208ENST00000454350 HFM1A2PYH4 1435 aa28.11■■■□□ 2.09
UBE2D4-208ENST00000454350 TRPM2O94759 1503 aa28.11■■■□□ 2.09
UBE2D4-208ENST00000454350 PIK3R4Q99570 1358 aa28.09■■■□□ 2.09
UBE2D4-208ENST00000454350 KIF1BO60333 1816 aa28.08■■■□□ 2.09
UBE2D4-208ENST00000454350 SETBP1Q9Y6X0 1596 aa28.07■■■□□ 2.08
UBE2D4-208ENST00000454350 MSH6P52701 1360 aa28.06■■■□□ 2.08
UBE2D4-208ENST00000454350 PTPRUQ92729 1446 aa28.06■■■□□ 2.08
UBE2D4-208ENST00000454350 NEXMIFQ5QGS0 1516 aa28.05■■■□□ 2.08
UBE2D4-208ENST00000454350 NCOA3Q9Y6Q9 1424 aa28.05■■■□□ 2.08
UBE2D4-208ENST00000454350 XRN1Q8IZH2 1706 aaKnown RBP28.04■■■□□ 2.08
UBE2D4-208ENST00000454350 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.04■■■□□ 2.08
UBE2D4-208ENST00000454350 SLAIN2Q9P270 581 aa27.99■■■□□ 2.07
UBE2D4-208ENST00000454350 PHLPP1O60346 1717 aa27.97■■■□□ 2.07
UBE2D4-208ENST00000454350 AMOTL2Q9Y2J4 779 aa27.96■■■□□ 2.07
UBE2D4-208ENST00000454350 ZNF326Q5BKZ1 582 aaKnown RBP27.95■■■□□ 2.06
UBE2D4-208ENST00000454350 SETD1AO15047 1707 aaKnown RBP27.95■■■□□ 2.06
UBE2D4-208ENST00000454350 TRIM52Q96A61 297 aa27.94■■■□□ 2.06
UBE2D4-208ENST00000454350 METP08581 1390 aa27.94■■■□□ 2.06
UBE2D4-208ENST00000454350 C19orf44Q9H6X5 657 aa27.91■■■□□ 2.06
UBE2D4-208ENST00000454350 COL16A1Q07092 1604 aaPredicted RBP27.91■■■□□ 2.06
UBE2D4-208ENST00000454350 PPLO60437 1756 aa27.91■■■□□ 2.06
UBE2D4-208ENST00000454350 SLC4A1APQ9BWU0 796 aaKnown RBP27.9■■■□□ 2.06
UBE2D4-208ENST00000454350 RGS17Q9UGC6 210 aaPredicted RBP27.9■■■□□ 2.06
UBE2D4-208ENST00000454350 PHF23Q9BUL5 403 aaPredicted RBP27.89■■■□□ 2.06
UBE2D4-208ENST00000454350 AHDC1Q5TGY3 1603 aaPredicted RBP27.85■■■□□ 2.05
UBE2D4-208ENST00000454350 C14orf37Q86TY3 774 aa27.85■■■□□ 2.05
UBE2D4-208ENST00000454350 CADPS2Q86UW7 1296 aa27.85■■■□□ 2.05
UBE2D4-208ENST00000454350 DCCP43146 1447 aa27.84■■■□□ 2.05
UBE2D4-208ENST00000454350 NALCNQ8IZF0 1738 aa27.84■■■□□ 2.05
UBE2D4-208ENST00000454350 FOXD1Q16676 465 aa27.82■■■□□ 2.04
UBE2D4-208ENST00000454350 ATF3P18847 181 aa27.81■■■□□ 2.04
UBE2D4-208ENST00000454350 IFT172Q9UG01 1749 aa27.78■■■□□ 2.04
UBE2D4-208ENST00000454350 JCADQ9P266 1359 aa27.78■■■□□ 2.04
UBE2D4-208ENST00000454350 RPGRIP1LQ68CZ1 1315 aa27.78■■■□□ 2.04
UBE2D4-208ENST00000454350 MST1RQ04912 1400 aa27.77■■■□□ 2.04
UBE2D4-208ENST00000454350 VGFO15240 615 aaPredicted RBP27.77■■■□□ 2.04
UBE2D4-208ENST00000454350 ADGRL3Q9HAR2 1447 aa27.76■■■□□ 2.04
UBE2D4-208ENST00000454350 SHPRHQ149N8 1683 aa27.76■■■□□ 2.03
UBE2D4-208ENST00000454350 BRINP3Q76B58 766 aa27.76■■■□□ 2.03
UBE2D4-208ENST00000454350 PRAG1Q86YV5 1406 aa27.75■■■□□ 2.03
UBE2D4-208ENST00000454350 NHSL1Q5SYE7 1610 aa27.75■■■□□ 2.03
UBE2D4-208ENST00000454350 MPHOSPH9Q99550 1183 aa27.75■■■□□ 2.03
UBE2D4-208ENST00000454350 SPATA31E1Q6ZUB1 1445 aa27.75■■■□□ 2.03
UBE2D4-208ENST00000454350 PTCH1Q13635 1447 aa27.74■■■□□ 2.03
UBE2D4-208ENST00000454350 ASXL1Q8IXJ9 1541 aa27.73■■■□□ 2.03
UBE2D4-208ENST00000454350 ROBO2Q9HCK4 1378 aa27.71■■■□□ 2.03
UBE2D4-208ENST00000454350 LRP6O75581 1613 aa27.7■■■□□ 2.03
UBE2D4-208ENST00000454350 CCDC144AA2RUR9 1427 aa27.7■■■□□ 2.03
UBE2D4-208ENST00000454350 POTEAQ6S8J7 498 aa27.7■■■□□ 2.02
UBE2D4-208ENST00000454350 SETD5Q9C0A6 1442 aa27.67■■■□□ 2.02
UBE2D4-208ENST00000454350 ADGRF5Q8IZF2 1346 aa27.67■■■□□ 2.02
UBE2D4-208ENST00000454350 SPATA31A6Q5VVP1 1343 aa27.65■■■□□ 2.02
UBE2D4-208ENST00000454350 LAMC1P11047 1609 aa27.64■■■□□ 2.02
UBE2D4-208ENST00000454350 RGL3Q3MIN7 710 aa27.61■■■□□ 2.01
UBE2D4-208ENST00000454350 C1orf167Q5SNV9 1468 aa27.61■■■□□ 2.01
UBE2D4-208ENST00000454350 ANKRD30BQ9BXX2 1392 aa27.6■■■□□ 2.01
UBE2D4-208ENST00000454350 KNDC1Q76NI1 1749 aa27.58■■■□□ 2.01
UBE2D4-208ENST00000454350 PIK3C2GO75747 1445 aa27.58■■■□□ 2
UBE2D4-208ENST00000454350 DDX17Q92841 729 aaKnown RBP27.57■■■□□ 2
UBE2D4-208ENST00000454350 ACIN1Q9UKV3 1341 aaKnown RBP27.57■■■□□ 2
UBE2D4-208ENST00000454350 RAB3GAP2Q9H2M9 1393 aa27.57■■■□□ 2
UBE2D4-208ENST00000454350 TECPR2O15040 1411 aa27.56■■■□□ 2
UBE2D4-208ENST00000454350 CDC42BPGQ6DT37 1551 aa27.54■■■□□ 2
UBE2D4-208ENST00000454350 NRXN1Q9ULB1 1477 aa27.51■■■□□ 2
UBE2D4-208ENST00000454350 LRPPRCP42704 1394 aaKnown RBP27.51■■□□□ 1.99
UBE2D4-208ENST00000454350 LRRC59Q96AG4 307 aaKnown RBP27.5■■□□□ 1.99
UBE2D4-208ENST00000454350 ORAI2Q96SN7 254 aa27.5■■□□□ 1.99
UBE2D4-208ENST00000454350 PNPLA6Q8IY17 1366 aa27.49■■□□□ 1.99
UBE2D4-208ENST00000454350 ABCC11Q96J66 1382 aa27.48■■□□□ 1.99
UBE2D4-208ENST00000454350 TMEM132EQ6IEE7 984 aa27.48■■□□□ 1.99
UBE2D4-208ENST00000454350 MYOM2P54296 1465 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms