RNA–Protein interactions for RNA: ENST00000448549.1

TRA2A-203, Transcript of transformer 2 alpha homolog, humanhuman

TSL 4

Gene TRA2A, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-203ENST00000448549 FAM135BQ49AJ0 1406 aa23.87■■□□□ 1.41
TRA2A-203ENST00000448549 ITGAEP38570 1179 aa23.87■■□□□ 1.41
TRA2A-203ENST00000448549 HDGFP51858 240 aaKnown RBP23.87■■□□□ 1.41
TRA2A-203ENST00000448549 ROCK1Q13464 1354 aa23.87■■□□□ 1.41
TRA2A-203ENST00000448549 XIRP1Q702N8 1843 aaKnown RBP23.87■■□□□ 1.41
TRA2A-203ENST00000448549 CHGAP10645 457 aaKnown RBP23.86■■□□□ 1.41
TRA2A-203ENST00000448549 RIMS2Q9UQ26 1411 aa23.85■■□□□ 1.41
TRA2A-203ENST00000448549 PPARGC1BQ86YN6 1023 aaKnown RBP23.85■■□□□ 1.41
TRA2A-203ENST00000448549 PLEKHG1Q9ULL1 1385 aa23.85■■□□□ 1.41
TRA2A-203ENST00000448549 UNC13BO14795 1591 aa23.82■■□□□ 1.4
TRA2A-203ENST00000448549 NKTRP30414 1462 aaKnown RBP23.82■■□□□ 1.4
TRA2A-203ENST00000448549 NUP155O75694 1391 aa23.81■■□□□ 1.4
TRA2A-203ENST00000448549 NUTM2DQ5VT03 806 aaPredicted RBP23.81■■□□□ 1.4
TRA2A-203ENST00000448549 NWD1Q149M9 1564 aa23.8■■□□□ 1.4
TRA2A-203ENST00000448549 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.8■■□□□ 1.4
TRA2A-203ENST00000448549 TMEM131LA2VDJ0 1609 aa23.8■■□□□ 1.4
TRA2A-203ENST00000448549 TBX22Q9Y458 520 aa23.79■■□□□ 1.4
TRA2A-203ENST00000448549 MSH6P52701 1360 aa23.78■■□□□ 1.4
TRA2A-203ENST00000448549 SLAIN2Q9P270 581 aa23.77■■□□□ 1.4
TRA2A-203ENST00000448549 RGS17Q9UGC6 210 aaPredicted RBP23.77■■□□□ 1.4
TRA2A-203ENST00000448549 GCC2Q8IWJ2 1684 aa23.76■■□□□ 1.39
TRA2A-203ENST00000448549 E9PCH4 1651 aa23.75■■□□□ 1.39
TRA2A-203ENST00000448549 IQGAP3Q86VI3 1631 aa23.73■■□□□ 1.39
TRA2A-203ENST00000448549 ADAMTS13Q76LX8 1427 aa23.72■■□□□ 1.39
TRA2A-203ENST00000448549 ROBO1Q9Y6N7 1651 aa23.72■■□□□ 1.39
TRA2A-203ENST00000448549 MYO5BQ9ULV0 1848 aa23.71■■□□□ 1.39
TRA2A-203ENST00000448549 C14orf37Q86TY3 774 aa23.7■■□□□ 1.38
TRA2A-203ENST00000448549 NCOA3Q9Y6Q9 1424 aa23.67■■□□□ 1.38
TRA2A-203ENST00000448549 CHD2O14647 1828 aaKnown RBP23.66■■□□□ 1.38
TRA2A-203ENST00000448549 PIK3R4Q99570 1358 aa23.65■■□□□ 1.38
TRA2A-203ENST00000448549 AMOTL2Q9Y2J4 779 aa23.65■■□□□ 1.38
TRA2A-203ENST00000448549 C19orf44Q9H6X5 657 aa23.64■■□□□ 1.37
TRA2A-203ENST00000448549 POTEAQ6S8J7 498 aa23.63■■□□□ 1.37
TRA2A-203ENST00000448549 DIP2AQ14689 1571 aa23.62■■□□□ 1.37
TRA2A-203ENST00000448549 ATF3P18847 181 aa23.62■■□□□ 1.37
TRA2A-203ENST00000448549 ZNF326Q5BKZ1 582 aaKnown RBP23.62■■□□□ 1.37
TRA2A-203ENST00000448549 CADPS2Q86UW7 1296 aa23.62■■□□□ 1.37
TRA2A-203ENST00000448549 JCADQ9P266 1359 aa23.61■■□□□ 1.37
TRA2A-203ENST00000448549 PTPRUQ92729 1446 aa23.6■■□□□ 1.37
TRA2A-203ENST00000448549 TRPM2O94759 1503 aa23.59■■□□□ 1.37
TRA2A-203ENST00000448549 RRBP1Q9P2E9 1410 aaKnown RBP23.56■■□□□ 1.36
TRA2A-203ENST00000448549 PHLPP1O60346 1717 aa23.56■■□□□ 1.36
TRA2A-203ENST00000448549 NAIPQ13075 1403 aa23.53■■□□□ 1.36
TRA2A-203ENST00000448549 METP08581 1390 aa23.52■■□□□ 1.36
TRA2A-203ENST00000448549 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.52■■□□□ 1.36
TRA2A-203ENST00000448549 COL16A1Q07092 1604 aaPredicted RBP23.51■■□□□ 1.35
TRA2A-203ENST00000448549 SPHKAPQ2M3C7 1700 aa23.51■■□□□ 1.35
TRA2A-203ENST00000448549 BRINP3Q76B58 766 aa23.51■■□□□ 1.35
TRA2A-203ENST00000448549 SETBP1Q9Y6X0 1596 aa23.51■■□□□ 1.35
TRA2A-203ENST00000448549 NRXN3Q9Y4C0 1643 aa23.5■■□□□ 1.35
TRA2A-203ENST00000448549 TRIM52Q96A61 297 aa23.49■■□□□ 1.35
TRA2A-203ENST00000448549 SPATA31A6Q5VVP1 1343 aa23.49■■□□□ 1.35
TRA2A-203ENST00000448549 LRP6O75581 1613 aa23.46■■□□□ 1.35
TRA2A-203ENST00000448549 DCCP43146 1447 aa23.46■■□□□ 1.35
TRA2A-203ENST00000448549 CLTCL1P53675 1640 aa23.46■■□□□ 1.35
TRA2A-203ENST00000448549 AHDC1Q5TGY3 1603 aaPredicted RBP23.46■■□□□ 1.35
TRA2A-203ENST00000448549 MEX3CQ5U5Q3 659 aaKnown RBP23.46■■□□□ 1.35
TRA2A-203ENST00000448549 XRN1Q8IZH2 1706 aaKnown RBP23.45■■□□□ 1.34
TRA2A-203ENST00000448549 NEXMIFQ5QGS0 1516 aa23.44■■□□□ 1.34
TRA2A-203ENST00000448549 HFM1A2PYH4 1435 aa23.42■■□□□ 1.34
TRA2A-203ENST00000448549 MST1RQ04912 1400 aa23.42■■□□□ 1.34
TRA2A-203ENST00000448549 SLC4A1APQ9BWU0 796 aaKnown RBP23.42■■□□□ 1.34
TRA2A-203ENST00000448549 VGFO15240 615 aaPredicted RBP23.41■■□□□ 1.34
TRA2A-203ENST00000448549 NUTM2BA6NNL0 878 aaPredicted RBP23.4■■□□□ 1.34
TRA2A-203ENST00000448549 NUTM2EB1AL46 878 aaPredicted RBP23.4■■□□□ 1.34
TRA2A-203ENST00000448549 NUTM2AQ8IVF1 878 aaPredicted RBP23.4■■□□□ 1.34
TRA2A-203ENST00000448549 ASXL1Q8IXJ9 1541 aa23.39■■□□□ 1.34
TRA2A-203ENST00000448549 ZNF772Q68DY9 489 aaPredicted RBP23.39■■□□□ 1.33
TRA2A-203ENST00000448549 ADGRL3Q9HAR2 1447 aa23.39■■□□□ 1.33
TRA2A-203ENST00000448549 DDX17Q92841 729 aaKnown RBP23.37■■□□□ 1.33
TRA2A-203ENST00000448549 RPGRIP1LQ68CZ1 1315 aa23.35■■□□□ 1.33
TRA2A-203ENST00000448549 SETD5Q9C0A6 1442 aa23.35■■□□□ 1.33
TRA2A-203ENST00000448549 LRRC59Q96AG4 307 aaKnown RBP23.35■■□□□ 1.33
TRA2A-203ENST00000448549 SHPRHQ149N8 1683 aa23.35■■□□□ 1.33
TRA2A-203ENST00000448549 FOXD1Q16676 465 aa23.34■■□□□ 1.33
TRA2A-203ENST00000448549 ROBO2Q9HCK4 1378 aa23.34■■□□□ 1.33
TRA2A-203ENST00000448549 PTCH1Q13635 1447 aa23.31■■□□□ 1.32
TRA2A-203ENST00000448549 KIF1BO60333 1816 aa23.31■■□□□ 1.32
TRA2A-203ENST00000448549 C1orf167Q5SNV9 1468 aa23.29■■□□□ 1.32
TRA2A-203ENST00000448549 RXRBP28702 533 aa23.28■■□□□ 1.32
TRA2A-203ENST00000448549 ORAI2Q96SN7 254 aa23.28■■□□□ 1.32
TRA2A-203ENST00000448549 AFF2P51816 1311 aa23.28■■□□□ 1.32
TRA2A-203ENST00000448549 SETD1AO15047 1707 aaKnown RBP23.28■■□□□ 1.32
TRA2A-203ENST00000448549 NALCNQ8IZF0 1738 aa23.28■■□□□ 1.32
TRA2A-203ENST00000448549 PNPLA6Q8IY17 1366 aa23.27■■□□□ 1.31
TRA2A-203ENST00000448549 NHSL1Q5SYE7 1610 aa23.26■■□□□ 1.31
TRA2A-203ENST00000448549 C8orf37Q96NL8 207 aa23.25■■□□□ 1.31
TRA2A-203ENST00000448549 RGL3Q3MIN7 710 aa23.24■■□□□ 1.31
TRA2A-203ENST00000448549 PRAG1Q86YV5 1406 aa23.24■■□□□ 1.31
TRA2A-203ENST00000448549 MPHOSPH9Q99550 1183 aa23.23■■□□□ 1.31
TRA2A-203ENST00000448549 ADGRF5Q8IZF2 1346 aa23.23■■□□□ 1.31
TRA2A-203ENST00000448549 CCDC144AA2RUR9 1427 aa23.22■■□□□ 1.31
TRA2A-203ENST00000448549 UPF1Q92900 1129 aaKnown RBP eCLIP23.21■■□□□ 1.31
TRA2A-203ENST00000448549 SOS2Q07890 1332 aaPredicted RBP23.21■■□□□ 1.31
TRA2A-203ENST00000448549 ADAMTS2O95450 1211 aa23.2■■□□□ 1.3
TRA2A-203ENST00000448549 STK26Q9P289 416 aa23.19■■□□□ 1.3
TRA2A-203ENST00000448549 QTRT2Q9H974 415 aaKnown RBP23.18■■□□□ 1.3
TRA2A-203ENST00000448549 SPATA31E1Q6ZUB1 1445 aa23.17■■□□□ 1.3
TRA2A-203ENST00000448549 PPLO60437 1756 aa23.17■■□□□ 1.3
TRA2A-203ENST00000448549 NGLY1Q96IV0 654 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms