RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 METTL3Q86U44 580 aaKnown RBP8.13□□□□□ -1.11
VPS41-207ENST00000439468 PXYLP1Q8TE99 480 aa8.13□□□□□ -1.11
VPS41-207ENST00000439468 TMEM134Q9H6X4 195 aa8.13□□□□□ -1.11
VPS41-207ENST00000439468 NLRP7Q8WX94 980 aa8.11□□□□□ -1.11
VPS41-207ENST00000439468 MAP2K5Q13163 448 aa8.1□□□□□ -1.11
VPS41-207ENST00000439468 KRI1Q8N9T8 703 aaKnown RBP8.09□□□□□ -1.11
VPS41-207ENST00000439468 APLP1P51693 650 aa8.08□□□□□ -1.12
VPS41-207ENST00000439468 TPRNQ4KMQ1 711 aa8.08□□□□□ -1.12
VPS41-207ENST00000439468 KCNC4Q03721 635 aa8.07□□□□□ -1.12
VPS41-207ENST00000439468 RDH13Q8NBN7 331 aa8.07□□□□□ -1.12
VPS41-207ENST00000439468 PRR14Q9BWN1 585 aa8.07□□□□□ -1.12
VPS41-207ENST00000439468 IRF6O14896 467 aa8.06□□□□□ -1.12
VPS41-207ENST00000439468 CFHP08603 1231 aa8.06□□□□□ -1.12
VPS41-207ENST00000439468 KMT5BQ4FZB7 885 aa8.06□□□□□ -1.12
VPS41-207ENST00000439468 RSPH4AQ5TD94 716 aa8.06□□□□□ -1.12
VPS41-207ENST00000439468 CCDC102AQ96A19 550 aa8.06□□□□□ -1.12
VPS41-207ENST00000439468 MINK1Q8N4C8 1332 aaPredicted RBP8.05□□□□□ -1.12
VPS41-207ENST00000439468 DDX11L8A8MPP1 907 aa8.05□□□□□ -1.12
VPS41-207ENST00000439468 ITGBL1O95965 494 aaPredicted RBP8.05□□□□□ -1.12
VPS41-207ENST00000439468 COPS2P61201 443 aa8.05□□□□□ -1.12
VPS41-207ENST00000439468 ZC3H15Q8WU90 426 aaKnown RBP8.05□□□□□ -1.12
VPS41-207ENST00000439468 PHOX2BQ99453 314 aa8.05□□□□□ -1.12
VPS41-207ENST00000439468 MTRQ99707 1265 aa8.05□□□□□ -1.12
VPS41-207ENST00000439468 DAXXQ9UER7 740 aaPredicted RBP8.05□□□□□ -1.12
VPS41-207ENST00000439468 PCDHB3Q9Y5E6 796 aa8.04□□□□□ -1.12
VPS41-207ENST00000439468 IL21Q9HBE4 155 aa8.03□□□□□ -1.12
VPS41-207ENST00000439468 SLC10A3P09131 477 aa8.02□□□□□ -1.13
VPS41-207ENST00000439468 MDM2Q00987 491 aaPredicted RBP8.02□□□□□ -1.13
VPS41-207ENST00000439468 SULF1Q8IWU6 871 aa8.02□□□□□ -1.13
VPS41-207ENST00000439468 TJAP1Q5JTD0 557 aa8.01□□□□□ -1.13
VPS41-207ENST00000439468 IFFO2Q5TF58 517 aa8.01□□□□□ -1.13
VPS41-207ENST00000439468 A0A0G2JS52 829 aa8□□□□□ -1.13
VPS41-207ENST00000439468 ZMYND10O75800 440 aa8□□□□□ -1.13
VPS41-207ENST00000439468 BARGINQ6ZT62 677 aa8□□□□□ -1.13
VPS41-207ENST00000439468 ACTN4O43707 911 aaKnown RBP7.99□□□□□ -1.13
VPS41-207ENST00000439468 BLOC1S3Q6QNY0 202 aa7.99□□□□□ -1.13
VPS41-207ENST00000439468 ZNF516Q92618 1163 aa7.99□□□□□ -1.13
VPS41-207ENST00000439468 CLCN1P35523 988 aa7.97□□□□□ -1.13
VPS41-207ENST00000439468 TTLL12Q14166 644 aaPredicted RBP7.97□□□□□ -1.13
VPS41-207ENST00000439468 PUS10Q3MIT2 529 aaKnown RBP7.96□□□□□ -1.14
VPS41-207ENST00000439468 GPCPD1Q9NPB8 672 aa7.96□□□□□ -1.14
VPS41-207ENST00000439468 ZPR1O75312 459 aa7.95□□□□□ -1.14
VPS41-207ENST00000439468 NR1I2O75469 434 aa7.95□□□□□ -1.14
VPS41-207ENST00000439468 NKX2-3Q8TAU0 364 aa7.95□□□□□ -1.14
VPS41-207ENST00000439468 TLL1O43897 1013 aa7.94□□□□□ -1.14
VPS41-207ENST00000439468 GCGRP47871 477 aa7.94□□□□□ -1.14
VPS41-207ENST00000439468 FUT2Q10981 343 aa7.94□□□□□ -1.14
VPS41-207ENST00000439468 CD46P15529 392 aa7.92□□□□□ -1.14
VPS41-207ENST00000439468 GGCXP38435 758 aa7.92□□□□□ -1.14
VPS41-207ENST00000439468 AK7Q96M32 723 aa7.92□□□□□ -1.14
VPS41-207ENST00000439468 ATP6V1AP38606 617 aa7.91□□□□□ -1.14
VPS41-207ENST00000439468 GRIPAP1Q4V328 841 aa7.91□□□□□ -1.14
VPS41-207ENST00000439468 PPP1R18Q6NYC8 613 aa7.91□□□□□ -1.14
VPS41-207ENST00000439468 SLC24A3Q9HC58 644 aa7.91□□□□□ -1.14
VPS41-207ENST00000439468 FAM217BQ9NTX9 383 aaPredicted RBP7.9□□□□□ -1.14
VPS41-207ENST00000439468 KDM4AO75164 1064 aa7.89□□□□□ -1.15
VPS41-207ENST00000439468 AMHR2Q16671 573 aa7.89□□□□□ -1.15
VPS41-207ENST00000439468 MORN1Q5T089 497 aa7.89□□□□□ -1.15
VPS41-207ENST00000439468 SCUBE3Q8IX30 993 aa7.89□□□□□ -1.15
VPS41-207ENST00000439468 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.89□□□□□ -1.15
VPS41-207ENST00000439468 TRIM66O15016 1216 aa7.88□□□□□ -1.15
VPS41-207ENST00000439468 RGS20O76081 388 aa7.88□□□□□ -1.15
VPS41-207ENST00000439468 ADH1BP00325 375 aa7.88□□□□□ -1.15
VPS41-207ENST00000439468 SSTR3P32745 418 aaPredicted RBP7.88□□□□□ -1.15
VPS41-207ENST00000439468 GIGYF2Q6Y7W6 1299 aaKnown RBP7.88□□□□□ -1.15
VPS41-207ENST00000439468 NUTM1Q86Y26 1132 aa7.88□□□□□ -1.15
VPS41-207ENST00000439468 REPIN1Q9BWE0 567 aaKnown RBP7.88□□□□□ -1.15
VPS41-207ENST00000439468 SPSB2Q99619 263 aa7.87□□□□□ -1.15
VPS41-207ENST00000439468 SLC27A5Q9Y2P5 690 aa7.87□□□□□ -1.15
VPS41-207ENST00000439468 FMNL1O95466 1100 aaPredicted RBP7.86□□□□□ -1.15
VPS41-207ENST00000439468 S1PR4O95977 384 aa7.86□□□□□ -1.15
VPS41-207ENST00000439468 TMUB1Q9BVT8 246 aa7.86□□□□□ -1.15
VPS41-207ENST00000439468 USP46P62068 366 aa7.85□□□□□ -1.15
VPS41-207ENST00000439468 PARP9Q8IXQ6 854 aa7.85□□□□□ -1.15
VPS41-207ENST00000439468 SLC6A16Q9GZN6 736 aa7.85□□□□□ -1.15
VPS41-207ENST00000439468 PDE4DQ08499 809 aa7.84□□□□□ -1.15
VPS41-207ENST00000439468 PPEF1O14829 653 aaPredicted RBP7.83□□□□□ -1.16
VPS41-207ENST00000439468 HOXA2O43364 376 aa7.83□□□□□ -1.16
VPS41-207ENST00000439468 Q3C1V9 767 aa7.83□□□□□ -1.16
VPS41-207ENST00000439468 HLA-CQ95604 372 aa7.83□□□□□ -1.16
VPS41-207ENST00000439468 PRKD2Q9BZL6 878 aa7.83□□□□□ -1.16
VPS41-207ENST00000439468 RNF223E7ERA6 249 aa7.82□□□□□ -1.16
VPS41-207ENST00000439468 GUCA2AQ02747 115 aa7.82□□□□□ -1.16
VPS41-207ENST00000439468 RNF19BQ6ZMZ0 732 aa7.82□□□□□ -1.16
VPS41-207ENST00000439468 BEGAINQ9BUH8 593 aa7.82□□□□□ -1.16
VPS41-207ENST00000439468 MS4A1P11836 297 aa7.8□□□□□ -1.16
VPS41-207ENST00000439468 THAP11Q96EK4 314 aa7.8□□□□□ -1.16
VPS41-207ENST00000439468 PRDM9Q9NQV7 894 aa7.8□□□□□ -1.16
VPS41-207ENST00000439468 BRICD5Q6PL45 260 aa7.79□□□□□ -1.16
VPS41-207ENST00000439468 ANKLE1Q8NAG6 615 aa7.79□□□□□ -1.16
VPS41-207ENST00000439468 SPIRE2Q8WWL2 714 aa7.79□□□□□ -1.16
VPS41-207ENST00000439468 IRX2Q9BZI1 471 aaPredicted RBP7.79□□□□□ -1.16
VPS41-207ENST00000439468 FDX1P10109 184 aa7.78□□□□□ -1.16
VPS41-207ENST00000439468 SALL2Q9Y467 1007 aaPredicted RBP7.78□□□□□ -1.16
VPS41-207ENST00000439468 C6orf229H3BNL8 230 aa7.77□□□□□ -1.17
VPS41-207ENST00000439468 NDUFV2P19404 249 aa7.77□□□□□ -1.17
VPS41-207ENST00000439468 FAM160A2Q8N612 972 aaPredicted RBP7.77□□□□□ -1.17
VPS41-207ENST00000439468 USB1Q9BQ65 265 aaKnown RBP7.77□□□□□ -1.17
VPS41-207ENST00000439468 MOXD2PA6NHM9 499 aa7.76□□□□□ -1.17
VPS41-207ENST00000439468 SLC19A1P41440 591 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms