RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 TMEM131LA2VDJ0 1609 aa28.03■■■□□ 2.08
AC004540.1-201ENST00000439120 ALKQ9UM73 1620 aa28.03■■■□□ 2.08
AC004540.1-201ENST00000439120 RRBP1Q9P2E9 1410 aaKnown RBP28.01■■■□□ 2.08
AC004540.1-201ENST00000439120 RIMS2Q9UQ26 1411 aa28.01■■■□□ 2.08
AC004540.1-201ENST00000439120 KCNA6P17658 529 aa28■■■□□ 2.07
AC004540.1-201ENST00000439120 SENP3Q9H4L4 574 aaPredicted RBP28■■■□□ 2.07
AC004540.1-201ENST00000439120 ZFYVE9O95405 1425 aa28■■■□□ 2.07
AC004540.1-201ENST00000439120 XIRP1Q702N8 1843 aaKnown RBP27.99■■■□□ 2.07
AC004540.1-201ENST00000439120 PLEKHG1Q9ULL1 1385 aa27.98■■■□□ 2.07
AC004540.1-201ENST00000439120 ILDR2Q71H61 639 aa27.97■■■□□ 2.07
AC004540.1-201ENST00000439120 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.97■■■□□ 2.07
AC004540.1-201ENST00000439120 PROSER2Q86WR7 435 aaPredicted RBP27.95■■■□□ 2.06
AC004540.1-201ENST00000439120 TMEM94Q12767 1356 aa27.95■■■□□ 2.06
AC004540.1-201ENST00000439120 NKTRP30414 1462 aaKnown RBP27.93■■■□□ 2.06
AC004540.1-201ENST00000439120 NWD1Q149M9 1564 aa27.93■■■□□ 2.06
AC004540.1-201ENST00000439120 SPHKAPQ2M3C7 1700 aa27.92■■■□□ 2.06
AC004540.1-201ENST00000439120 NUTM2DQ5VT03 806 aaPredicted RBP27.89■■■□□ 2.06
AC004540.1-201ENST00000439120 NAIPQ13075 1403 aa27.88■■■□□ 2.05
AC004540.1-201ENST00000439120 MED1Q15648 1581 aaPredicted RBP27.88■■■□□ 2.05
AC004540.1-201ENST00000439120 RBM33Q96EV2 1170 aaKnown RBP27.88■■■□□ 2.05
AC004540.1-201ENST00000439120 CHD2O14647 1828 aaKnown RBP27.86■■■□□ 2.05
AC004540.1-201ENST00000439120 TBX22Q9Y458 520 aa27.85■■■□□ 2.05
AC004540.1-201ENST00000439120 DIP2AQ14689 1571 aa27.84■■■□□ 2.05
AC004540.1-201ENST00000439120 MSH6P52701 1360 aa27.84■■■□□ 2.05
AC004540.1-201ENST00000439120 ZNF326Q5BKZ1 582 aaKnown RBP27.82■■■□□ 2.04
AC004540.1-201ENST00000439120 SOCS7O14512 581 aa27.81■■■□□ 2.04
AC004540.1-201ENST00000439120 TRIM52Q96A61 297 aa27.81■■■□□ 2.04
AC004540.1-201ENST00000439120 HFM1A2PYH4 1435 aa27.8■■■□□ 2.04
AC004540.1-201ENST00000439120 FAM135BQ49AJ0 1406 aa27.79■■■□□ 2.04
AC004540.1-201ENST00000439120 ADAMTS13Q76LX8 1427 aa27.79■■■□□ 2.04
AC004540.1-201ENST00000439120 PHF23Q9BUL5 403 aaPredicted RBP27.78■■■□□ 2.04
AC004540.1-201ENST00000439120 TRPM2O94759 1503 aa27.77■■■□□ 2.04
AC004540.1-201ENST00000439120 C14orf37Q86TY3 774 aa27.77■■■□□ 2.04
AC004540.1-201ENST00000439120 PIK3R4Q99570 1358 aa27.76■■■□□ 2.03
AC004540.1-201ENST00000439120 ROBO1Q9Y6N7 1651 aa27.76■■■□□ 2.03
AC004540.1-201ENST00000439120 CLTCL1P53675 1640 aa27.75■■■□□ 2.03
AC004540.1-201ENST00000439120 KIF1BO60333 1816 aa27.73■■■□□ 2.03
AC004540.1-201ENST00000439120 NCOA3Q9Y6Q9 1424 aa27.71■■■□□ 2.03
AC004540.1-201ENST00000439120 SLC4A1APQ9BWU0 796 aaKnown RBP27.7■■■□□ 2.02
AC004540.1-201ENST00000439120 SLAIN2Q9P270 581 aa27.7■■■□□ 2.02
AC004540.1-201ENST00000439120 SETBP1Q9Y6X0 1596 aa27.69■■■□□ 2.02
AC004540.1-201ENST00000439120 AMOTL2Q9Y2J4 779 aa27.68■■■□□ 2.02
AC004540.1-201ENST00000439120 NRXN3Q9Y4C0 1643 aa27.67■■■□□ 2.02
AC004540.1-201ENST00000439120 NEXMIFQ5QGS0 1516 aa27.65■■■□□ 2.02
AC004540.1-201ENST00000439120 ATF3P18847 181 aa27.64■■■□□ 2.02
AC004540.1-201ENST00000439120 CADPS2Q86UW7 1296 aa27.63■■■□□ 2.01
AC004540.1-201ENST00000439120 C19orf44Q9H6X5 657 aa27.63■■■□□ 2.01
AC004540.1-201ENST00000439120 PTPRUQ92729 1446 aa27.63■■■□□ 2.01
AC004540.1-201ENST00000439120 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.62■■■□□ 2.01
AC004540.1-201ENST00000439120 PHLPP1O60346 1717 aa27.61■■■□□ 2.01
AC004540.1-201ENST00000439120 XRN1Q8IZH2 1706 aaKnown RBP27.6■■■□□ 2.01
AC004540.1-201ENST00000439120 METP08581 1390 aa27.58■■■□□ 2.01
AC004540.1-201ENST00000439120 VGFO15240 615 aaPredicted RBP27.56■■■□□ 2
AC004540.1-201ENST00000439120 RPGRIP1LQ68CZ1 1315 aa27.53■■■□□ 2
AC004540.1-201ENST00000439120 DCCP43146 1447 aa27.52■■■□□ 2
AC004540.1-201ENST00000439120 FOXD1Q16676 465 aa27.52■■■□□ 2
AC004540.1-201ENST00000439120 JCADQ9P266 1359 aa27.5■■□□□ 1.99
AC004540.1-201ENST00000439120 CCDC144AA2RUR9 1427 aa27.5■■□□□ 1.99
AC004540.1-201ENST00000439120 COL16A1Q07092 1604 aaPredicted RBP27.49■■□□□ 1.99
AC004540.1-201ENST00000439120 PPLO60437 1756 aa27.48■■□□□ 1.99
AC004540.1-201ENST00000439120 MPHOSPH9Q99550 1183 aa27.47■■□□□ 1.99
AC004540.1-201ENST00000439120 AHDC1Q5TGY3 1603 aaPredicted RBP27.45■■□□□ 1.99
AC004540.1-201ENST00000439120 ACIN1Q9UKV3 1341 aaKnown RBP27.45■■□□□ 1.99
AC004540.1-201ENST00000439120 ADGRL3Q9HAR2 1447 aa27.44■■□□□ 1.98
AC004540.1-201ENST00000439120 SETD1AO15047 1707 aaKnown RBP27.44■■□□□ 1.98
AC004540.1-201ENST00000439120 BRINP3Q76B58 766 aa27.43■■□□□ 1.98
AC004540.1-201ENST00000439120 NALCNQ8IZF0 1738 aa27.42■■□□□ 1.98
AC004540.1-201ENST00000439120 RGS17Q9UGC6 210 aaPredicted RBP27.42■■□□□ 1.98
AC004540.1-201ENST00000439120 SETD5Q9C0A6 1442 aa27.41■■□□□ 1.98
AC004540.1-201ENST00000439120 MST1RQ04912 1400 aa27.41■■□□□ 1.98
AC004540.1-201ENST00000439120 PTCH1Q13635 1447 aa27.41■■□□□ 1.98
AC004540.1-201ENST00000439120 RGL3Q3MIN7 710 aa27.4■■□□□ 1.98
AC004540.1-201ENST00000439120 ASXL1Q8IXJ9 1541 aa27.39■■□□□ 1.98
AC004540.1-201ENST00000439120 SPATA31A6Q5VVP1 1343 aa27.38■■□□□ 1.97
AC004540.1-201ENST00000439120 SHPRHQ149N8 1683 aa27.36■■□□□ 1.97
AC004540.1-201ENST00000439120 ROBO2Q9HCK4 1378 aa27.35■■□□□ 1.97
AC004540.1-201ENST00000439120 MEX3CQ5U5Q3 659 aaKnown RBP27.35■■□□□ 1.97
AC004540.1-201ENST00000439120 ANKRD30BQ9BXX2 1392 aa27.35■■□□□ 1.97
AC004540.1-201ENST00000439120 SPATA31E1Q6ZUB1 1445 aa27.34■■□□□ 1.97
AC004540.1-201ENST00000439120 IFT172Q9UG01 1749 aa27.33■■□□□ 1.96
AC004540.1-201ENST00000439120 NHSL1Q5SYE7 1610 aa27.32■■□□□ 1.96
AC004540.1-201ENST00000439120 ADGRF5Q8IZF2 1346 aa27.32■■□□□ 1.96
AC004540.1-201ENST00000439120 PRAG1Q86YV5 1406 aa27.32■■□□□ 1.96
AC004540.1-201ENST00000439120 POTEAQ6S8J7 498 aa27.31■■□□□ 1.96
AC004540.1-201ENST00000439120 RAB3GAP2Q9H2M9 1393 aa27.3■■□□□ 1.96
AC004540.1-201ENST00000439120 LRP6O75581 1613 aa27.28■■□□□ 1.96
AC004540.1-201ENST00000439120 C1orf167Q5SNV9 1468 aa27.27■■□□□ 1.96
AC004540.1-201ENST00000439120 LRRC59Q96AG4 307 aaKnown RBP27.26■■□□□ 1.95
AC004540.1-201ENST00000439120 NUTM2BA6NNL0 878 aaPredicted RBP27.25■■□□□ 1.95
AC004540.1-201ENST00000439120 NUTM2EB1AL46 878 aaPredicted RBP27.25■■□□□ 1.95
AC004540.1-201ENST00000439120 NUTM2AQ8IVF1 878 aaPredicted RBP27.25■■□□□ 1.95
AC004540.1-201ENST00000439120 STK26Q9P289 416 aa27.25■■□□□ 1.95
AC004540.1-201ENST00000439120 DDX17Q92841 729 aaKnown RBP27.23■■□□□ 1.95
AC004540.1-201ENST00000439120 PIK3C2GO75747 1445 aa27.23■■□□□ 1.95
AC004540.1-201ENST00000439120 ZNF772Q68DY9 489 aaPredicted RBP27.2■■□□□ 1.94
AC004540.1-201ENST00000439120 LRPPRCP42704 1394 aaKnown RBP27.2■■□□□ 1.94
AC004540.1-201ENST00000439120 CDC42BPGQ6DT37 1551 aa27.19■■□□□ 1.94
AC004540.1-201ENST00000439120 TMEM132EQ6IEE7 984 aa27.19■■□□□ 1.94
AC004540.1-201ENST00000439120 ORAI2Q96SN7 254 aa27.19■■□□□ 1.94
AC004540.1-201ENST00000439120 TECPR2O15040 1411 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms