RNA–Protein interactions for RNA: ENST00000438745.1

HMGB3P12-201, Transcript of high mobility group box 3 pseudogene 12, humanhuman

BASIC

Gene HMGB3P12, Length 556 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P12-201ENST00000438745 SLF2Q8IX21 1173 aa8.35□□□□□ -1.07
HMGB3P12-201ENST00000438745 IRF6O14896 467 aa8.34□□□□□ -1.07
HMGB3P12-201ENST00000438745 ZMYND10O75800 440 aa8.34□□□□□ -1.07
HMGB3P12-201ENST00000438745 PHOX2BQ99453 314 aa8.34□□□□□ -1.07
HMGB3P12-201ENST00000438745 ITGBL1O95965 494 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P12-201ENST00000438745 ZC3H15Q8WU90 426 aaKnown RBP8.33□□□□□ -1.08
HMGB3P12-201ENST00000438745 BARGINQ6ZT62 677 aa8.32□□□□□ -1.08
HMGB3P12-201ENST00000438745 NECTIN2Q92692 538 aa8.32□□□□□ -1.08
HMGB3P12-201ENST00000438745 A0A0G2JS52 829 aa8.31□□□□□ -1.08
HMGB3P12-201ENST00000438745 DAXXQ9UER7 740 aaPredicted RBP8.31□□□□□ -1.08
HMGB3P12-201ENST00000438745 SLC10A3P09131 477 aa8.3□□□□□ -1.08
HMGB3P12-201ENST00000438745 SLC4A3P48751 1232 aa8.29□□□□□ -1.08
HMGB3P12-201ENST00000438745 APLP1P51693 650 aa8.29□□□□□ -1.08
HMGB3P12-201ENST00000438745 TJAP1Q5JTD0 557 aa8.28□□□□□ -1.08
HMGB3P12-201ENST00000438745 BCANQ96GW7 911 aa8.28□□□□□ -1.08
HMGB3P12-201ENST00000438745 RNF40O75150 1001 aa8.26□□□□□ -1.09
HMGB3P12-201ENST00000438745 CCDC102AQ96A19 550 aa8.26□□□□□ -1.09
HMGB3P12-201ENST00000438745 NLRP7Q8WX94 980 aa8.25□□□□□ -1.09
HMGB3P12-201ENST00000438745 TMUB1Q9BVT8 246 aa8.25□□□□□ -1.09
HMGB3P12-201ENST00000438745 PRR14Q9BWN1 585 aa8.25□□□□□ -1.09
HMGB3P12-201ENST00000438745 ACTN4O43707 911 aaKnown RBP8.24□□□□□ -1.09
HMGB3P12-201ENST00000438745 KCNC4Q03721 635 aa8.24□□□□□ -1.09
HMGB3P12-201ENST00000438745 MTRQ99707 1265 aa8.23□□□□□ -1.09
HMGB3P12-201ENST00000438745 RSPH4AQ5TD94 716 aa8.22□□□□□ -1.09
HMGB3P12-201ENST00000438745 KRI1Q8N9T8 703 aaKnown RBP8.22□□□□□ -1.09
HMGB3P12-201ENST00000438745 IL21Q9HBE4 155 aa8.22□□□□□ -1.09
HMGB3P12-201ENST00000438745 CFHP08603 1231 aa8.21□□□□□ -1.1
HMGB3P12-201ENST00000438745 KMT5BQ4FZB7 885 aa8.21□□□□□ -1.1
HMGB3P12-201ENST00000438745 SULF1Q8IWU6 871 aa8.21□□□□□ -1.1
HMGB3P12-201ENST00000438745 ZNF516Q92618 1163 aa8.2□□□□□ -1.1
HMGB3P12-201ENST00000438745 DDX11L8A8MPP1 907 aa8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 RGS20O76081 388 aa8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 CD46P15529 392 aa8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 GCGRP47871 477 aa8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 MDM2Q00987 491 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 AMHR2Q16671 573 aa8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 REPIN1Q9BWE0 567 aaKnown RBP8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 IRX2Q9BZI1 471 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P12-201ENST00000438745 CLCN1P35523 988 aa8.18□□□□□ -1.1
HMGB3P12-201ENST00000438745 GPCPD1Q9NPB8 672 aa8.18□□□□□ -1.1
HMGB3P12-201ENST00000438745 PCDHB3Q9Y5E6 796 aa8.18□□□□□ -1.1
HMGB3P12-201ENST00000438745 ZPR1O75312 459 aa8.17□□□□□ -1.1
HMGB3P12-201ENST00000438745 AK7Q96M32 723 aa8.17□□□□□ -1.1
HMGB3P12-201ENST00000438745 TRIM66O15016 1216 aa8.16□□□□□ -1.1
HMGB3P12-201ENST00000438745 COPS2P61201 443 aa8.16□□□□□ -1.1
HMGB3P12-201ENST00000438745 BLOC1S3Q6QNY0 202 aa8.16□□□□□ -1.1
HMGB3P12-201ENST00000438745 RDH13Q8NBN7 331 aa8.16□□□□□ -1.1
HMGB3P12-201ENST00000438745 FAM217BQ9NTX9 383 aaPredicted RBP8.16□□□□□ -1.1
HMGB3P12-201ENST00000438745 SCUBE3Q8IX30 993 aa8.14□□□□□ -1.11
HMGB3P12-201ENST00000438745 NKX2-3Q8TAU0 364 aa8.14□□□□□ -1.11
HMGB3P12-201ENST00000438745 ATP6V1AP38606 617 aa8.13□□□□□ -1.11
HMGB3P12-201ENST00000438745 FUT2Q10981 343 aa8.13□□□□□ -1.11
HMGB3P12-201ENST00000438745 MORN1Q5T089 497 aa8.13□□□□□ -1.11
HMGB3P12-201ENST00000438745 SLC24A3Q9HC58 644 aa8.13□□□□□ -1.11
HMGB3P12-201ENST00000438745 NR1I2O75469 434 aa8.12□□□□□ -1.11
HMGB3P12-201ENST00000438745 SSTR3P32745 418 aaPredicted RBP8.12□□□□□ -1.11
HMGB3P12-201ENST00000438745 PUS10Q3MIT2 529 aaKnown RBP8.12□□□□□ -1.11
HMGB3P12-201ENST00000438745 PPP1R18Q6NYC8 613 aa8.11□□□□□ -1.11
HMGB3P12-201ENST00000438745 SALL2Q9Y467 1007 aaPredicted RBP8.11□□□□□ -1.11
HMGB3P12-201ENST00000438745 THAP11Q96EK4 314 aa8.1□□□□□ -1.11
HMGB3P12-201ENST00000438745 KDM4AO75164 1064 aa8.09□□□□□ -1.11
HMGB3P12-201ENST00000438745 PARP9Q8IXQ6 854 aa8.09□□□□□ -1.11
HMGB3P12-201ENST00000438745 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.09□□□□□ -1.11
HMGB3P12-201ENST00000438745 USP46P62068 366 aa8.08□□□□□ -1.12
HMGB3P12-201ENST00000438745 PDE4DQ08499 809 aa8.08□□□□□ -1.12
HMGB3P12-201ENST00000438745 GRIPAP1Q4V328 841 aa8.08□□□□□ -1.12
HMGB3P12-201ENST00000438745 GIGYF2Q6Y7W6 1299 aaKnown RBP8.08□□□□□ -1.12
HMGB3P12-201ENST00000438745 SLC27A5Q9Y2P5 690 aa8.08□□□□□ -1.12
HMGB3P12-201ENST00000438745 TTLL12Q14166 644 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P12-201ENST00000438745 LCE2BO14633 110 aa8.06□□□□□ -1.12
HMGB3P12-201ENST00000438745 TLL1O43897 1013 aa8.06□□□□□ -1.12
HMGB3P12-201ENST00000438745 ADH1BP00325 375 aa8.06□□□□□ -1.12
HMGB3P12-201ENST00000438745 BRICD5Q6PL45 260 aa8.06□□□□□ -1.12
HMGB3P12-201ENST00000438745 Q6ZNB5 142 aa8.05□□□□□ -1.12
HMGB3P12-201ENST00000438745 SPSB2Q99619 263 aa8.05□□□□□ -1.12
HMGB3P12-201ENST00000438745 HOXA2O43364 376 aa8.04□□□□□ -1.12
HMGB3P12-201ENST00000438745 MS4A1P11836 297 aa8.04□□□□□ -1.12
HMGB3P12-201ENST00000438745 GGCXP38435 758 aa8.04□□□□□ -1.12
HMGB3P12-201ENST00000438745 SPIRE2Q8WWL2 714 aa8.04□□□□□ -1.12
HMGB3P12-201ENST00000438745 PRKD2Q9BZL6 878 aa8.04□□□□□ -1.12
HMGB3P12-201ENST00000438745 RNF223E7ERA6 249 aa8.03□□□□□ -1.12
HMGB3P12-201ENST00000438745 FMNL1O95466 1100 aaPredicted RBP8.03□□□□□ -1.12
HMGB3P12-201ENST00000438745 FAM160A2Q8N612 972 aaPredicted RBP8.03□□□□□ -1.12
HMGB3P12-201ENST00000438745 S1PR4O95977 384 aa8.02□□□□□ -1.13
HMGB3P12-201ENST00000438745 RNF19BQ6ZMZ0 732 aa8.02□□□□□ -1.13
HMGB3P12-201ENST00000438745 NUTM1Q86Y26 1132 aa8.02□□□□□ -1.13
HMGB3P12-201ENST00000438745 BEGAINQ9BUH8 593 aa8.02□□□□□ -1.13
HMGB3P12-201ENST00000438745 SLC6A16Q9GZN6 736 aa8.02□□□□□ -1.13
HMGB3P12-201ENST00000438745 Q3C1V9 767 aa8.01□□□□□ -1.13
HMGB3P12-201ENST00000438745 ANKLE1Q8NAG6 615 aa8.01□□□□□ -1.13
HMGB3P12-201ENST00000438745 HLA-CQ95604 372 aa8.01□□□□□ -1.13
HMGB3P12-201ENST00000438745 GFRA3O60609 400 aa8□□□□□ -1.13
HMGB3P12-201ENST00000438745 MSS51Q4VC12 460 aa8□□□□□ -1.13
HMGB3P12-201ENST00000438745 V9GY48 417 aaPredicted RBP8□□□□□ -1.13
HMGB3P12-201ENST00000438745 GJA5P36382 358 aa7.99□□□□□ -1.13
HMGB3P12-201ENST00000438745 DIXDC1Q155Q3 683 aa7.99□□□□□ -1.13
HMGB3P12-201ENST00000438745 EMID1Q96A84 441 aaPredicted RBP7.99□□□□□ -1.13
HMGB3P12-201ENST00000438745 MOXD2PA6NHM9 499 aa7.98□□□□□ -1.13
HMGB3P12-201ENST00000438745 PPEF1O14829 653 aaPredicted RBP7.98□□□□□ -1.13
HMGB3P12-201ENST00000438745 GUCA2AQ02747 115 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms