RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 PRKD2Q9BZL6 878 aa13.74□□□□□ -0.21
LINC01040-201ENST00000425048 PCDHB3Q9Y5E6 796 aa13.74□□□□□ -0.21
LINC01040-201ENST00000425048 ZPR1O75312 459 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 OATP04181 439 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 GGCXP38435 758 aa13.72□□□□□ -0.21
LINC01040-201ENST00000425048 HIC1Q14526 733 aa13.71□□□□□ -0.21
LINC01040-201ENST00000425048 LAPTM4AQ15012 233 aa13.71□□□□□ -0.21
LINC01040-201ENST00000425048 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.7□□□□□ -0.22
LINC01040-201ENST00000425048 KMT5BQ4FZB7 885 aa13.69□□□□□ -0.22
LINC01040-201ENST00000425048 RBM26Q5T8P6 1007 aaKnown RBP13.69□□□□□ -0.22
LINC01040-201ENST00000425048 Q6ZNB5 142 aa13.69□□□□□ -0.22
LINC01040-201ENST00000425048 V9GY48 417 aaPredicted RBP13.69□□□□□ -0.22
LINC01040-201ENST00000425048 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
LINC01040-201ENST00000425048 TMUB1Q9BVT8 246 aa13.68□□□□□ -0.22
LINC01040-201ENST00000425048 PXYLP1Q8TE99 480 aa13.67□□□□□ -0.22
LINC01040-201ENST00000425048 ACTN4O43707 911 aaKnown RBP13.66□□□□□ -0.22
LINC01040-201ENST00000425048 GFRA3O60609 400 aa13.66□□□□□ -0.22
LINC01040-201ENST00000425048 BLOC1S3Q6QNY0 202 aa13.66□□□□□ -0.22
LINC01040-201ENST00000425048 CFHP08603 1231 aa13.63□□□□□ -0.23
LINC01040-201ENST00000425048 RSPH4AQ5TD94 716 aa13.63□□□□□ -0.23
LINC01040-201ENST00000425048 GNPATO15228 680 aa13.62□□□□□ -0.23
LINC01040-201ENST00000425048 SLC10A3P09131 477 aa13.62□□□□□ -0.23
LINC01040-201ENST00000425048 METTL3Q86U44 580 aaKnown RBP13.61□□□□□ -0.23
LINC01040-201ENST00000425048 FECHP22830 423 aa13.58□□□□□ -0.24
LINC01040-201ENST00000425048 NRG2O14511 850 aaPredicted RBP13.56□□□□□ -0.24
LINC01040-201ENST00000425048 NR1I2O75469 434 aa13.56□□□□□ -0.24
LINC01040-201ENST00000425048 KDM2AQ9Y2K7 1162 aa13.56□□□□□ -0.24
LINC01040-201ENST00000425048 RNF223E7ERA6 249 aa13.55□□□□□ -0.24
LINC01040-201ENST00000425048 GPR37O15354 613 aa13.54□□□□□ -0.24
LINC01040-201ENST00000425048 TLL1O43897 1013 aa13.54□□□□□ -0.24
LINC01040-201ENST00000425048 DAXXQ9UER7 740 aaPredicted RBP13.54□□□□□ -0.24
LINC01040-201ENST00000425048 TRAF7Q6Q0C0 670 aa13.53□□□□□ -0.24
LINC01040-201ENST00000425048 SLC19A1P41440 591 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 SCUBE3Q8IX30 993 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
LINC01040-201ENST00000425048 GPIHBP1Q8IV16 184 aa13.5□□□□□ -0.25
LINC01040-201ENST00000425048 S1PR4O95977 384 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 ADH1BP00325 375 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 ANKLE1Q8NAG6 615 aa13.49□□□□□ -0.25
LINC01040-201ENST00000425048 RDH13Q8NBN7 331 aa13.48□□□□□ -0.25
LINC01040-201ENST00000425048 PPEF1O14829 653 aaPredicted RBP13.47□□□□□ -0.25
LINC01040-201ENST00000425048 PUS10Q3MIT2 529 aaKnown RBP13.47□□□□□ -0.25
LINC01040-201ENST00000425048 DDX11L8A8MPP1 907 aa13.46□□□□□ -0.25
LINC01040-201ENST00000425048 VSIG10Q8N0Z9 540 aa13.46□□□□□ -0.25
LINC01040-201ENST00000425048 SLC6A16Q9GZN6 736 aa13.45□□□□□ -0.26
LINC01040-201ENST00000425048 SPRYD7Q5W111 196 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 SULF1Q8IWU6 871 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 NLRP7Q8WX94 980 aa13.43□□□□□ -0.26
LINC01040-201ENST00000425048 EMID1Q96A84 441 aaPredicted RBP13.43□□□□□ -0.26
LINC01040-201ENST00000425048 TULP1O00294 542 aaPredicted RBP13.42□□□□□ -0.26
LINC01040-201ENST00000425048 LCE2BO14633 110 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 PHOX2BQ99453 314 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 SPSB2Q99619 263 aa13.42□□□□□ -0.26
LINC01040-201ENST00000425048 ZNF598Q86UK7 904 aaKnown RBP13.41□□□□□ -0.26
LINC01040-201ENST00000425048 ATP6V1AP38606 617 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 GCGRP47871 477 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 MORN1Q5T089 497 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 LIAT1Q6ZQX7 453 aa13.4□□□□□ -0.26
LINC01040-201ENST00000425048 FUT2Q10981 343 aa13.39□□□□□ -0.27
LINC01040-201ENST00000425048 TRIM67Q6ZTA4 783 aa13.36□□□□□ -0.27
LINC01040-201ENST00000425048 ZNF697Q5TEC3 545 aa13.34□□□□□ -0.27
LINC01040-201ENST00000425048 FMNL1O95466 1100 aaPredicted RBP13.33□□□□□ -0.28
LINC01040-201ENST00000425048 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 THAP11Q96EK4 314 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 SLC27A5Q9Y2P5 690 aa13.33□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20EP86478 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20CP86479 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20DP86480 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20BP86481 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PRR20AP86496 221 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 GRIPAP1Q4V328 841 aa13.32□□□□□ -0.28
LINC01040-201ENST00000425048 SALL2Q9Y467 1007 aaPredicted RBP13.32□□□□□ -0.28
LINC01040-201ENST00000425048 PLA2G2CQ5R387 149 aa13.31□□□□□ -0.28
LINC01040-201ENST00000425048 IRF6O14896 467 aa13.3□□□□□ -0.28
LINC01040-201ENST00000425048 MINK1Q8N4C8 1332 aaPredicted RBP13.29□□□□□ -0.28
LINC01040-201ENST00000425048 GDF9O60383 454 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 DGAT1O75907 488 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 PKDCCQ504Y2 493 aa13.28□□□□□ -0.28
LINC01040-201ENST00000425048 FAM160A2Q8N612 972 aaPredicted RBP13.28□□□□□ -0.28
LINC01040-201ENST00000425048 BRICD5Q6PL45 260 aa13.27□□□□□ -0.29
LINC01040-201ENST00000425048 CD46P15529 392 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 RPIAP49247 311 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 ZNF787Q6DD87 383 aa13.25□□□□□ -0.29
LINC01040-201ENST00000425048 TNFRSF10AO00220 468 aa13.24□□□□□ -0.29
LINC01040-201ENST00000425048 CD2BP2O95400 341 aaKnown RBP13.24□□□□□ -0.29
LINC01040-201ENST00000425048 FCF1Q9Y324 198 aaKnown RBP13.24□□□□□ -0.29
LINC01040-201ENST00000425048 MDM2Q00987 491 aaPredicted RBP13.22□□□□□ -0.29
LINC01040-201ENST00000425048 Q3C1V9 767 aa13.22□□□□□ -0.29
LINC01040-201ENST00000425048 KDM4AO75164 1064 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 MYT1Q01538 1121 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 MSS51Q4VC12 460 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 LMOD2Q6P5Q4 547 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 RNF19BQ6ZMZ0 732 aa13.21□□□□□ -0.29
LINC01040-201ENST00000425048 FOXC1Q12948 553 aa13.2□□□□□ -0.3
LINC01040-201ENST00000425048 FAM187AA6NFU0 413 aa13.19□□□□□ -0.3
LINC01040-201ENST00000425048 CCDC102AQ96A19 550 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 PRDM9Q9NQV7 894 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 PKD2L1Q9P0L9 805 aa13.18□□□□□ -0.3
LINC01040-201ENST00000425048 ZBTB24O43167 697 aaPredicted RBP13.17□□□□□ -0.3
LINC01040-201ENST00000425048 USP46P62068 366 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms