RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 HRO43593 1189 aa5.72□□□□□ -1.49
VPS41-206ENST00000418457 HDGFP51858 240 aaKnown RBP5.72□□□□□ -1.49
VPS41-206ENST00000418457 SSTR3P32745 418 aaPredicted RBP5.71□□□□□ -1.5
VPS41-206ENST00000418457 FAM217BQ9NTX9 383 aaPredicted RBP5.71□□□□□ -1.5
VPS41-206ENST00000418457 GOLGA8CPA6NN73 597 aa5.7□□□□□ -1.5
VPS41-206ENST00000418457 SWT1Q5T5J6 900 aaKnown RBP5.7□□□□□ -1.5
VPS41-206ENST00000418457 SULF1Q8IWU6 871 aa5.7□□□□□ -1.5
VPS41-206ENST00000418457 DDRGK1Q96HY6 314 aa5.7□□□□□ -1.5
VPS41-206ENST00000418457 ZFRQ96KR1 1074 aaKnown RBP5.7□□□□□ -1.5
VPS41-206ENST00000418457 DDX11L8A8MPP1 907 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 MS4A1P11836 297 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 SLC4A3P48751 1232 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 TMEM132AQ24JP5 1023 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 SAMD7Q7Z3H4 446 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 IL27Q8NEV9 243 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 FAM117AQ9C073 453 aa5.69□□□□□ -1.5
VPS41-206ENST00000418457 SLF2Q8IX21 1173 aa5.68□□□□□ -1.5
VPS41-206ENST00000418457 RDH13Q8NBN7 331 aa5.68□□□□□ -1.5
VPS41-206ENST00000418457 RNF40O75150 1001 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 CD46P15529 392 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 RSPH4AQ5TD94 716 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 ANKK1Q8NFD2 765 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 LRCH3Q96II8 777 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 BEGAINQ9BUH8 593 aa5.67□□□□□ -1.5
VPS41-206ENST00000418457 WNT2BQ93097 391 aa5.66□□□□□ -1.5
VPS41-206ENST00000418457 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.66□□□□□ -1.5
VPS41-206ENST00000418457 PLEKHG3A1L390 1219 aa5.65□□□□□ -1.5
VPS41-206ENST00000418457 NECTIN2Q92692 538 aa5.65□□□□□ -1.5
VPS41-206ENST00000418457 PCDH10Q9P2E7 1040 aa5.65□□□□□ -1.5
VPS41-206ENST00000418457 SOWAHBA6NEL2 793 aa5.64□□□□□ -1.51
VPS41-206ENST00000418457 SLC10A3P09131 477 aa5.64□□□□□ -1.51
VPS41-206ENST00000418457 BCAMP50895 628 aa5.63□□□□□ -1.51
VPS41-206ENST00000418457 DIXDC1Q155Q3 683 aa5.63□□□□□ -1.51
VPS41-206ENST00000418457 NUTM1Q86Y26 1132 aa5.63□□□□□ -1.51
VPS41-206ENST00000418457 RSPH6AQ9H0K4 717 aa5.63□□□□□ -1.51
VPS41-206ENST00000418457 HPS5Q9UPZ3 1129 aa5.63□□□□□ -1.51
VPS41-206ENST00000418457 CFHP08603 1231 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 GCGRP47871 477 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 PPP4CP60510 307 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 KMT5BQ4FZB7 885 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 SPIRE2Q8WWL2 714 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 KCTD12Q96CX2 325 aaKnown RBP5.62□□□□□ -1.51
VPS41-206ENST00000418457 TBC1D2Q9BYX2 928 aa5.62□□□□□ -1.51
VPS41-206ENST00000418457 KDM4AO75164 1064 aa5.61□□□□□ -1.51
VPS41-206ENST00000418457 SH3D19Q5HYK7 790 aa5.61□□□□□ -1.51
VPS41-206ENST00000418457 THSD4Q6ZMP0 1018 aa5.61□□□□□ -1.51
VPS41-206ENST00000418457 GOPCQ9HD26 462 aa5.61□□□□□ -1.51
VPS41-206ENST00000418457 TSR3Q9UJK0 312 aaKnown RBP5.61□□□□□ -1.51
VPS41-206ENST00000418457 MYT1LQ9UL68 1186 aa5.61□□□□□ -1.51
VPS41-206ENST00000418457 USP46P62068 366 aa5.6□□□□□ -1.51
VPS41-206ENST00000418457 MYSM1Q5VVJ2 828 aa5.6□□□□□ -1.51
VPS41-206ENST00000418457 PRR14Q9BWN1 585 aa5.6□□□□□ -1.51
VPS41-206ENST00000418457 SKIV2LQ15477 1246 aaKnown RBP5.59□□□□□ -1.51
VPS41-206ENST00000418457 GRIPAP1Q4V328 841 aa5.59□□□□□ -1.51
VPS41-206ENST00000418457 PCMTD1Q96MG8 357 aaPredicted RBP5.59□□□□□ -1.51
VPS41-206ENST00000418457 ATP1B4Q9UN42 357 aaPredicted RBP5.59□□□□□ -1.51
VPS41-206ENST00000418457 HOXA2O43364 376 aa5.58□□□□□ -1.52
VPS41-206ENST00000418457 ACTN4O43707 911 aaKnown RBP5.58□□□□□ -1.52
VPS41-206ENST00000418457 CLK2P49760 499 aaKnown RBP5.58□□□□□ -1.52
VPS41-206ENST00000418457 FUT2Q10981 343 aa5.58□□□□□ -1.52
VPS41-206ENST00000418457 POLR3EQ9NVU0 708 aa5.58□□□□□ -1.52
VPS41-206ENST00000418457 WBP1LQ9NX94 342 aa5.58□□□□□ -1.52
VPS41-206ENST00000418457 MOXD2PA6NHM9 499 aa5.57□□□□□ -1.52
VPS41-206ENST00000418457 ATP6V1AP38606 617 aa5.57□□□□□ -1.52
VPS41-206ENST00000418457 PTPN5P54829 565 aa5.57□□□□□ -1.52
VPS41-206ENST00000418457 RIC3Q7Z5B4 369 aa5.57□□□□□ -1.52
VPS41-206ENST00000418457 SPNS2Q8IVW8 549 aa5.57□□□□□ -1.52
VPS41-206ENST00000418457 SPTLC1O15269 473 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 FDX1P10109 184 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 NDUFV2P19404 249 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 GJA5P36382 358 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 APLP1P51693 650 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 RSBN1LQ6PCB5 846 aaPredicted RBP5.56□□□□□ -1.52
VPS41-206ENST00000418457 NYAP1Q6ZVC0 841 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 RNF166Q96A37 237 aaPredicted RBP5.56□□□□□ -1.52
VPS41-206ENST00000418457 LIMD1Q9UGP4 676 aa5.56□□□□□ -1.52
VPS41-206ENST00000418457 TUSC1Q2TAM9 212 aa5.55□□□□□ -1.52
VPS41-206ENST00000418457 PUS10Q3MIT2 529 aaKnown RBP5.55□□□□□ -1.52
VPS41-206ENST00000418457 PROCA1Q8NCQ7 364 aaPredicted RBP5.55□□□□□ -1.52
VPS41-206ENST00000418457 PCDHB3Q9Y5E6 796 aa5.55□□□□□ -1.52
VPS41-206ENST00000418457 GUCA2AQ02747 115 aa5.54□□□□□ -1.52
VPS41-206ENST00000418457 CSPP1Q1MSJ5 1256 aa5.54□□□□□ -1.52
VPS41-206ENST00000418457 MORN1Q5T089 497 aa5.54□□□□□ -1.52
VPS41-206ENST00000418457 HLA-CQ95604 372 aa5.54□□□□□ -1.52
VPS41-206ENST00000418457 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS41-206ENST00000418457 GTF3C3Q9Y5Q9 886 aa5.54□□□□□ -1.52
VPS41-206ENST00000418457 PCDHB15Q9Y5E8 787 aa5.53□□□□□ -1.52
VPS41-206ENST00000418457 NR1I2O75469 434 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 PRPF38BQ5VTL8 546 aaKnown RBP5.52□□□□□ -1.53
VPS41-206ENST00000418457 BLOC1S3Q6QNY0 202 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 ZBTB3Q9H5J0 574 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 HCSTQ9UBK5 93 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 PCDHGC3Q9UN70 934 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 SLC27A5Q9Y2P5 690 aa5.52□□□□□ -1.53
VPS41-206ENST00000418457 NUTM2BA6NNL0 878 aaPredicted RBP5.51□□□□□ -1.53
VPS41-206ENST00000418457 NUTM2EB1AL46 878 aaPredicted RBP5.51□□□□□ -1.53
VPS41-206ENST00000418457 LILRB3O75022 631 aa5.51□□□□□ -1.53
VPS41-206ENST00000418457 MTMR2Q13614 643 aa5.51□□□□□ -1.53
VPS41-206ENST00000418457 Q3C1V9 767 aa5.51□□□□□ -1.53
VPS41-206ENST00000418457 NUTM2DQ5VT03 806 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms