RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CHMP7Q8WUX9 453 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-204ENST00000413716 REC8O95072 547 aa16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 PLEKHD1A6NEE1 506 aa16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 U2AF1L5P0DN76 240 aaPredicted RBP16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 U2AF1Q01081 240 aaKnown RBP eCLIP16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 SMARCE1Q969G3 411 aa16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 FBXW7Q969H0 707 aa16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 RUFY2Q8WXA3 655 aa16.11■□□□□ 0.17
CCDC88A-204ENST00000413716 GTF2E1P29083 439 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-204ENST00000413716 ZKSCAN1P17029 563 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-204ENST00000413716 CWC22Q9HCG8 908 aaKnown RBP16.1■□□□□ 0.17
CCDC88A-204ENST00000413716 PAK3O75914 559 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-204ENST00000413716 CCDC73Q6ZRK6 1079 aa16.1■□□□□ 0.17
CCDC88A-204ENST00000413716 TTLL5Q6EMB2 1281 aa16.09■□□□□ 0.17
CCDC88A-204ENST00000413716 DHX16O60231 1041 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-204ENST00000413716 CENPJQ9HC77 1338 aaPredicted RBP16.09■□□□□ 0.17
CCDC88A-204ENST00000413716 LMOD3Q0VAK6 560 aa16.09■□□□□ 0.17
CCDC88A-204ENST00000413716 SYCP1Q15431 976 aa16.09■□□□□ 0.17
CCDC88A-204ENST00000413716 EIF3JO75822 258 aaKnown RBP16.08■□□□□ 0.17
CCDC88A-204ENST00000413716 SAFBQ15424 915 aaKnown RBP eCLIP16.08■□□□□ 0.17
CCDC88A-204ENST00000413716 CFDP1Q9UEE9 299 aaPredicted RBP16.08■□□□□ 0.17
CCDC88A-204ENST00000413716 ERICH2A1L162 156 aa16.08■□□□□ 0.17
CCDC88A-204ENST00000413716 WWC2Q6AWC2 1192 aa16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 SPATA24Q86W54 205 aa16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 SLC26A8Q96RN1 970 aa16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 BCL11BQ9C0K0 894 aaPredicted RBP16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 NASPP49321 788 aaPredicted RBP16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 BRMS1Q9HCU9 246 aa16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.16
CCDC88A-204ENST00000413716 FAM161AQ3B820 660 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 HMGN5P82970 282 aaKnown RBP16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 IQCEQ6IPM2 695 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 TXLNBQ8N3L3 684 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 TRDNQ13061 729 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 CEP63Q96MT8 703 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 ANO2Q9NQ90 1003 aa16.07■□□□□ 0.16
CCDC88A-204ENST00000413716 RNF20Q5VTR2 975 aa16.06■□□□□ 0.16
CCDC88A-204ENST00000413716 NFXL1Q6ZNB6 911 aa16.06■□□□□ 0.16
CCDC88A-204ENST00000413716 LUC7LQ9NQ29 371 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 PPM1EQ8WY54 764 aa16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 DCAF11Q8TEB1 546 aa16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 CENPHQ9H3R5 247 aa16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 CHMP5Q9NZZ3 219 aa16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 CENPQQ7L2Z9 268 aaPredicted RBP16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 GOLGA3Q08378 1498 aa16.05■□□□□ 0.16
CCDC88A-204ENST00000413716 CCDC91Q7Z6B0 441 aa16.04■□□□□ 0.16
CCDC88A-204ENST00000413716 EEA1Q15075 1411 aa16.04■□□□□ 0.16
CCDC88A-204ENST00000413716 LETM1O95202 739 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-204ENST00000413716 ROCK2O75116 1388 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 MAGEC2Q9UBF1 373 aaPredicted RBP16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 DHX8Q14562 1220 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 TAX1BP1Q86VP1 789 aa16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 CFAP57Q96MR6 1250 aa16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 FEZ1Q99689 392 aa16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 CCDC9Q9Y3X0 531 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-204ENST00000413716 RBM33Q96EV2 1170 aaKnown RBP16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 KIF3BO15066 747 aa16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 ERLIN1O75477 346 aa16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 CCDC97Q96F63 343 aaPredicted RBP16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 STAMBPO95630 424 aa16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 VPS37DQ86XT2 251 aa16.02■□□□□ 0.16
CCDC88A-204ENST00000413716 KIF7Q2M1P5 1343 aa16.02■□□□□ 0.15
CCDC88A-204ENST00000413716 GOLGA6L10A0A0M3HER8 536 aa16.02■□□□□ 0.15
CCDC88A-204ENST00000413716 DDX11Q96FC9 970 aa16.01■□□□□ 0.15
CCDC88A-204ENST00000413716 LRRCC1Q9C099 1032 aa16.01■□□□□ 0.15
CCDC88A-204ENST00000413716 DHX37Q8IY37 1157 aaKnown RBP16.01■□□□□ 0.15
CCDC88A-204ENST00000413716 SAFB2Q14151 953 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC88A-204ENST00000413716 NUCB2P80303 420 aa16■□□□□ 0.15
CCDC88A-204ENST00000413716 SMC2O95347 1197 aa16■□□□□ 0.15
CCDC88A-204ENST00000413716 ANKRD45Q5TZF3 282 aa16■□□□□ 0.15
CCDC88A-204ENST00000413716 TMEM132AQ24JP5 1023 aa16■□□□□ 0.15
CCDC88A-204ENST00000413716 ZNHIT6Q9NWK9 470 aaKnown RBP16■□□□□ 0.15
CCDC88A-204ENST00000413716 VPS37CA5D8V6 355 aaPredicted RBP16■□□□□ 0.15
CCDC88A-204ENST00000413716 FILIP1LQ4L180 1135 aa16■□□□□ 0.15
CCDC88A-204ENST00000413716 CCDC181Q5TID7 509 aa15.99■□□□□ 0.15
CCDC88A-204ENST00000413716 XBP1P17861 261 aa15.99■□□□□ 0.15
CCDC88A-204ENST00000413716 CCDC146Q8IYE0 955 aa15.99■□□□□ 0.15
CCDC88A-204ENST00000413716 SMC3Q9UQE7 1217 aa15.99■□□□□ 0.15
CCDC88A-204ENST00000413716 CCDC112Q8NEF3 446 aa15.99■□□□□ 0.15
CCDC88A-204ENST00000413716 TRIM5Q9C035 493 aa15.98■□□□□ 0.15
CCDC88A-204ENST00000413716 TSHZ2Q9NRE2 1034 aa15.98■□□□□ 0.15
CCDC88A-204ENST00000413716 ROCK1Q13464 1354 aa15.98■□□□□ 0.15
CCDC88A-204ENST00000413716 PIP4K2AP48426 406 aaPredicted RBP15.97■□□□□ 0.15
CCDC88A-204ENST00000413716 DDX23Q9BUQ8 820 aaKnown RBP15.97■□□□□ 0.15
CCDC88A-204ENST00000413716 RSPH4AQ5TD94 716 aa15.96■□□□□ 0.15
CCDC88A-204ENST00000413716 HSP90AB4PQ58FF6 505 aa15.96■□□□□ 0.14
CCDC88A-204ENST00000413716 CLUAP1Q96AJ1 413 aa15.96■□□□□ 0.14
CCDC88A-204ENST00000413716 DESP17661 470 aa15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 CEP162Q5TB80 1403 aa15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 CAVIN1Q6NZI2 390 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 CDK5RAP3Q96JB5 506 aa15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 KINO60870 393 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 TXLNAP40222 546 aa15.95■□□□□ 0.14
CCDC88A-204ENST00000413716 MRE11P49959 708 aa15.94■□□□□ 0.14
CCDC88A-204ENST00000413716 SDF4Q9BRK5 362 aa15.94■□□□□ 0.14
CCDC88A-204ENST00000413716 TICAM2Q86XR7 235 aa15.94■□□□□ 0.14
CCDC88A-204ENST00000413716 FAM193AP78312 1265 aa15.93■□□□□ 0.14
CCDC88A-204ENST00000413716 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-204ENST00000413716 CCDC175P0C221 793 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 182.5 ms