RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 RRBP1Q9P2E9 1410 aaKnown RBP33.99■■■■□ 3.03
MSH6-202ENST00000411819 CHGAP10645 457 aaKnown RBP33.98■■■■□ 3.03
MSH6-202ENST00000411819 ZFYVE9O95405 1425 aa33.96■■■■□ 3.03
MSH6-202ENST00000411819 RIMS2Q9UQ26 1411 aa33.96■■■■□ 3.03
MSH6-202ENST00000411819 PPP1R15AO75807 674 aaPredicted RBP33.96■■■■□ 3.03
MSH6-202ENST00000411819 SENP3Q9H4L4 574 aaPredicted RBP33.96■■■■□ 3.03
MSH6-202ENST00000411819 ILDR2Q71H61 639 aa33.91■■■■□ 3.02
MSH6-202ENST00000411819 PLEKHG1Q9ULL1 1385 aa33.9■■■■□ 3.02
MSH6-202ENST00000411819 KCNA6P17658 529 aa33.9■■■■□ 3.02
MSH6-202ENST00000411819 HDGFP51858 240 aaKnown RBP33.9■■■■□ 3.02
MSH6-202ENST00000411819 NWD1Q149M9 1564 aa33.89■■■■□ 3.02
MSH6-202ENST00000411819 SPHKAPQ2M3C7 1700 aa33.87■■■■□ 3.01
MSH6-202ENST00000411819 TMEM94Q12767 1356 aa33.87■■■■□ 3.01
MSH6-202ENST00000411819 NKTRP30414 1462 aaKnown RBP33.86■■■■□ 3.01
MSH6-202ENST00000411819 PROSER2Q86WR7 435 aaPredicted RBP33.84■■■■□ 3.01
MSH6-202ENST00000411819 MED1Q15648 1581 aaPredicted RBP33.83■■■■□ 3.01
MSH6-202ENST00000411819 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.83■■■■□ 3.01
MSH6-202ENST00000411819 NAIPQ13075 1403 aa33.82■■■■□ 3
MSH6-202ENST00000411819 NUTM2DQ5VT03 806 aaPredicted RBP33.82■■■■□ 3
MSH6-202ENST00000411819 RBM33Q96EV2 1170 aaKnown RBP33.8■■■■□ 3
MSH6-202ENST00000411819 CHD2O14647 1828 aaKnown RBP33.8■■■■□ 3
MSH6-202ENST00000411819 DIP2AQ14689 1571 aa33.75■■■□□ 2.99
MSH6-202ENST00000411819 TBX22Q9Y458 520 aa33.72■■■□□ 2.99
MSH6-202ENST00000411819 HFM1A2PYH4 1435 aa33.71■■■□□ 2.99
MSH6-202ENST00000411819 ADAMTS13Q76LX8 1427 aa33.71■■■□□ 2.99
MSH6-202ENST00000411819 MSH6P52701 1360 aa33.71■■■□□ 2.99
MSH6-202ENST00000411819 CLTCL1P53675 1640 aa33.69■■■□□ 2.98
MSH6-202ENST00000411819 TRPM2O94759 1503 aa33.68■■■□□ 2.98
MSH6-202ENST00000411819 ROBO1Q9Y6N7 1651 aa33.68■■■□□ 2.98
MSH6-202ENST00000411819 ZNF326Q5BKZ1 582 aaKnown RBP33.67■■■□□ 2.98
MSH6-202ENST00000411819 TRIM52Q96A61 297 aa33.67■■■□□ 2.98
MSH6-202ENST00000411819 FAM135BQ49AJ0 1406 aa33.67■■■□□ 2.98
MSH6-202ENST00000411819 SOCS7O14512 581 aa33.65■■■□□ 2.98
MSH6-202ENST00000411819 KIF1BO60333 1816 aa33.63■■■□□ 2.97
MSH6-202ENST00000411819 PIK3R4Q99570 1358 aa33.62■■■□□ 2.97
MSH6-202ENST00000411819 PHF23Q9BUL5 403 aaPredicted RBP33.61■■■□□ 2.97
MSH6-202ENST00000411819 NRXN3Q9Y4C0 1643 aa33.61■■■□□ 2.97
MSH6-202ENST00000411819 C14orf37Q86TY3 774 aa33.59■■■□□ 2.97
MSH6-202ENST00000411819 SETBP1Q9Y6X0 1596 aa33.58■■■□□ 2.97
MSH6-202ENST00000411819 NEXMIFQ5QGS0 1516 aa33.56■■■□□ 2.96
MSH6-202ENST00000411819 NCOA3Q9Y6Q9 1424 aa33.54■■■□□ 2.96
MSH6-202ENST00000411819 SLC4A1APQ9BWU0 796 aaKnown RBP33.54■■■□□ 2.96
MSH6-202ENST00000411819 PTPRUQ92729 1446 aa33.53■■■□□ 2.96
MSH6-202ENST00000411819 SLAIN2Q9P270 581 aa33.52■■■□□ 2.96
MSH6-202ENST00000411819 AMOTL2Q9Y2J4 779 aa33.52■■■□□ 2.96
MSH6-202ENST00000411819 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.5■■■□□ 2.95
MSH6-202ENST00000411819 XRN1Q8IZH2 1706 aaKnown RBP33.5■■■□□ 2.95
MSH6-202ENST00000411819 PHLPP1O60346 1717 aa33.48■■■□□ 2.95
MSH6-202ENST00000411819 ATF3P18847 181 aa33.43■■■□□ 2.94
MSH6-202ENST00000411819 C19orf44Q9H6X5 657 aa33.43■■■□□ 2.94
MSH6-202ENST00000411819 METP08581 1390 aa33.43■■■□□ 2.94
MSH6-202ENST00000411819 CADPS2Q86UW7 1296 aa33.42■■■□□ 2.94
MSH6-202ENST00000411819 FOXD1Q16676 465 aa33.39■■■□□ 2.94
MSH6-202ENST00000411819 PPLO60437 1756 aa33.36■■■□□ 2.93
MSH6-202ENST00000411819 COL16A1Q07092 1604 aaPredicted RBP33.35■■■□□ 2.93
MSH6-202ENST00000411819 VGFO15240 615 aaPredicted RBP33.34■■■□□ 2.93
MSH6-202ENST00000411819 DCCP43146 1447 aa33.34■■■□□ 2.93
MSH6-202ENST00000411819 SETD1AO15047 1707 aaKnown RBP33.33■■■□□ 2.93
MSH6-202ENST00000411819 CCDC144AA2RUR9 1427 aa33.32■■■□□ 2.92
MSH6-202ENST00000411819 RPGRIP1LQ68CZ1 1315 aa33.31■■■□□ 2.92
MSH6-202ENST00000411819 JCADQ9P266 1359 aa33.31■■■□□ 2.92
MSH6-202ENST00000411819 AHDC1Q5TGY3 1603 aaPredicted RBP33.3■■■□□ 2.92
MSH6-202ENST00000411819 NALCNQ8IZF0 1738 aa33.29■■■□□ 2.92
MSH6-202ENST00000411819 MPHOSPH9Q99550 1183 aa33.28■■■□□ 2.92
MSH6-202ENST00000411819 ADGRL3Q9HAR2 1447 aa33.27■■■□□ 2.92
MSH6-202ENST00000411819 RGS17Q9UGC6 210 aaPredicted RBP33.24■■■□□ 2.91
MSH6-202ENST00000411819 MST1RQ04912 1400 aa33.23■■■□□ 2.91
MSH6-202ENST00000411819 BRINP3Q76B58 766 aa33.23■■■□□ 2.91
MSH6-202ENST00000411819 ASXL1Q8IXJ9 1541 aa33.23■■■□□ 2.91
MSH6-202ENST00000411819 PTCH1Q13635 1447 aa33.22■■■□□ 2.91
MSH6-202ENST00000411819 SETD5Q9C0A6 1442 aa33.21■■■□□ 2.91
MSH6-202ENST00000411819 RGL3Q3MIN7 710 aa33.19■■■□□ 2.9
MSH6-202ENST00000411819 IFT172Q9UG01 1749 aa33.19■■■□□ 2.9
MSH6-202ENST00000411819 SHPRHQ149N8 1683 aa33.18■■■□□ 2.9
MSH6-202ENST00000411819 ROBO2Q9HCK4 1378 aa33.17■■■□□ 2.9
MSH6-202ENST00000411819 SPATA31E1Q6ZUB1 1445 aa33.17■■■□□ 2.9
MSH6-202ENST00000411819 NHSL1Q5SYE7 1610 aa33.15■■■□□ 2.9
MSH6-202ENST00000411819 ACIN1Q9UKV3 1341 aaKnown RBP33.15■■■□□ 2.9
MSH6-202ENST00000411819 PRAG1Q86YV5 1406 aa33.13■■■□□ 2.89
MSH6-202ENST00000411819 SPATA31A6Q5VVP1 1343 aa33.13■■■□□ 2.89
MSH6-202ENST00000411819 ADGRF5Q8IZF2 1346 aa33.13■■■□□ 2.89
MSH6-202ENST00000411819 LRP6O75581 1613 aa33.12■■■□□ 2.89
MSH6-202ENST00000411819 ANKRD30BQ9BXX2 1392 aa33.11■■■□□ 2.89
MSH6-202ENST00000411819 RAB3GAP2Q9H2M9 1393 aa33.1■■■□□ 2.89
MSH6-202ENST00000411819 POTEAQ6S8J7 498 aa33.1■■■□□ 2.89
MSH6-202ENST00000411819 MEX3CQ5U5Q3 659 aaKnown RBP33.09■■■□□ 2.89
MSH6-202ENST00000411819 C1orf167Q5SNV9 1468 aa33.06■■■□□ 2.88
MSH6-202ENST00000411819 DDX17Q92841 729 aaKnown RBP33.03■■■□□ 2.88
MSH6-202ENST00000411819 PIK3C2GO75747 1445 aa33.02■■■□□ 2.88
MSH6-202ENST00000411819 NUTM2BA6NNL0 878 aaPredicted RBP33■■■□□ 2.87
MSH6-202ENST00000411819 NUTM2EB1AL46 878 aaPredicted RBP33■■■□□ 2.87
MSH6-202ENST00000411819 NUTM2AQ8IVF1 878 aaPredicted RBP33■■■□□ 2.87
MSH6-202ENST00000411819 STK26Q9P289 416 aa33■■■□□ 2.87
MSH6-202ENST00000411819 CDC42BPGQ6DT37 1551 aa32.99■■■□□ 2.87
MSH6-202ENST00000411819 KNDC1Q76NI1 1749 aa32.99■■■□□ 2.87
MSH6-202ENST00000411819 LRRC59Q96AG4 307 aaKnown RBP32.98■■■□□ 2.87
MSH6-202ENST00000411819 LRPPRCP42704 1394 aaKnown RBP32.96■■■□□ 2.87
MSH6-202ENST00000411819 TECPR2O15040 1411 aa32.95■■■□□ 2.87
MSH6-202ENST00000411819 TMEM132EQ6IEE7 984 aa32.95■■■□□ 2.87
MSH6-202ENST00000411819 ORAI2Q96SN7 254 aa32.95■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms