RNA–Protein interactions for RNA: ENST00000410731.1

RNU4-55P-201, Transcript of RNA, U4 small nuclear 55, pseudogene, humanhuman

BASIC

Gene RNU4-55P, Length 137 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-55P-201ENST00000410731 NECTIN2Q92692 538 aa8.66□□□□□ -1.02
RNU4-55P-201ENST00000410731 MAP2K5Q13163 448 aa8.65□□□□□ -1.02
RNU4-55P-201ENST00000410731 ITGBL1O95965 494 aaPredicted RBP8.62□□□□□ -1.03
RNU4-55P-201ENST00000410731 IFFO2Q5TF58 517 aa8.62□□□□□ -1.03
RNU4-55P-201ENST00000410731 MINK1Q8N4C8 1332 aaPredicted RBP8.61□□□□□ -1.03
RNU4-55P-201ENST00000410731 IRF6O14896 467 aa8.6□□□□□ -1.03
RNU4-55P-201ENST00000410731 APLP1P51693 650 aa8.59□□□□□ -1.03
RNU4-55P-201ENST00000410731 ZC3H15Q8WU90 426 aaKnown RBP8.59□□□□□ -1.03
RNU4-55P-201ENST00000410731 PHOX2BQ99453 314 aa8.59□□□□□ -1.03
RNU4-55P-201ENST00000410731 PRR14Q9BWN1 585 aa8.59□□□□□ -1.03
RNU4-55P-201ENST00000410731 CCDC102AQ96A19 550 aa8.58□□□□□ -1.04
RNU4-55P-201ENST00000410731 BCANQ96GW7 911 aa8.58□□□□□ -1.04
RNU4-55P-201ENST00000410731 ZMYND10O75800 440 aa8.57□□□□□ -1.04
RNU4-55P-201ENST00000410731 BARGINQ6ZT62 677 aa8.57□□□□□ -1.04
RNU4-55P-201ENST00000410731 DAXXQ9UER7 740 aaPredicted RBP8.57□□□□□ -1.04
RNU4-55P-201ENST00000410731 NLRP7Q8WX94 980 aa8.56□□□□□ -1.04
RNU4-55P-201ENST00000410731 CFHP08603 1231 aa8.55□□□□□ -1.04
RNU4-55P-201ENST00000410731 SLC10A3P09131 477 aa8.55□□□□□ -1.04
RNU4-55P-201ENST00000410731 MTRQ99707 1265 aa8.55□□□□□ -1.04
RNU4-55P-201ENST00000410731 KCNC4Q03721 635 aa8.54□□□□□ -1.04
RNU4-55P-201ENST00000410731 KMT5BQ4FZB7 885 aa8.54□□□□□ -1.04
RNU4-55P-201ENST00000410731 TJAP1Q5JTD0 557 aa8.54□□□□□ -1.04
RNU4-55P-201ENST00000410731 RSPH4AQ5TD94 716 aa8.54□□□□□ -1.04
RNU4-55P-201ENST00000410731 SULF1Q8IWU6 871 aa8.53□□□□□ -1.04
RNU4-55P-201ENST00000410731 IL21Q9HBE4 155 aa8.53□□□□□ -1.04
RNU4-55P-201ENST00000410731 A0A0G2JS52 829 aa8.52□□□□□ -1.05
RNU4-55P-201ENST00000410731 ACTN4O43707 911 aaKnown RBP8.52□□□□□ -1.05
RNU4-55P-201ENST00000410731 DDX11L8A8MPP1 907 aa8.51□□□□□ -1.05
RNU4-55P-201ENST00000410731 KRI1Q8N9T8 703 aaKnown RBP8.51□□□□□ -1.05
RNU4-55P-201ENST00000410731 PCDHB3Q9Y5E6 796 aa8.51□□□□□ -1.05
RNU4-55P-201ENST00000410731 MDM2Q00987 491 aaPredicted RBP8.5□□□□□ -1.05
RNU4-55P-201ENST00000410731 RDH13Q8NBN7 331 aa8.5□□□□□ -1.05
RNU4-55P-201ENST00000410731 CLCN1P35523 988 aa8.48□□□□□ -1.05
RNU4-55P-201ENST00000410731 COPS2P61201 443 aa8.48□□□□□ -1.05
RNU4-55P-201ENST00000410731 GPCPD1Q9NPB8 672 aa8.48□□□□□ -1.05
RNU4-55P-201ENST00000410731 BLOC1S3Q6QNY0 202 aa8.47□□□□□ -1.05
RNU4-55P-201ENST00000410731 ZNF516Q92618 1163 aa8.47□□□□□ -1.05
RNU4-55P-201ENST00000410731 TMUB1Q9BVT8 246 aa8.47□□□□□ -1.05
RNU4-55P-201ENST00000410731 ZPR1O75312 459 aa8.46□□□□□ -1.06
RNU4-55P-201ENST00000410731 CD46P15529 392 aa8.46□□□□□ -1.06
RNU4-55P-201ENST00000410731 GCGRP47871 477 aa8.46□□□□□ -1.06
RNU4-55P-201ENST00000410731 AMHR2Q16671 573 aa8.46□□□□□ -1.06
RNU4-55P-201ENST00000410731 RGS20O76081 388 aa8.44□□□□□ -1.06
RNU4-55P-201ENST00000410731 AK7Q96M32 723 aa8.44□□□□□ -1.06
RNU4-55P-201ENST00000410731 FAM217BQ9NTX9 383 aaPredicted RBP8.44□□□□□ -1.06
RNU4-55P-201ENST00000410731 NR1I2O75469 434 aa8.43□□□□□ -1.06
RNU4-55P-201ENST00000410731 TRIM66O15016 1216 aa8.42□□□□□ -1.06
RNU4-55P-201ENST00000410731 FUT2Q10981 343 aa8.42□□□□□ -1.06
RNU4-55P-201ENST00000410731 TTLL12Q14166 644 aaPredicted RBP8.42□□□□□ -1.06
RNU4-55P-201ENST00000410731 REPIN1Q9BWE0 567 aaKnown RBP8.42□□□□□ -1.06
RNU4-55P-201ENST00000410731 TLL1O43897 1013 aa8.41□□□□□ -1.06
RNU4-55P-201ENST00000410731 ATP6V1AP38606 617 aa8.41□□□□□ -1.06
RNU4-55P-201ENST00000410731 PUS10Q3MIT2 529 aaKnown RBP8.41□□□□□ -1.06
RNU4-55P-201ENST00000410731 NKX2-3Q8TAU0 364 aa8.41□□□□□ -1.06
RNU4-55P-201ENST00000410731 MORN1Q5T089 497 aa8.4□□□□□ -1.06
RNU4-55P-201ENST00000410731 GIGYF2Q6Y7W6 1299 aaKnown RBP8.39□□□□□ -1.07
RNU4-55P-201ENST00000410731 SCUBE3Q8IX30 993 aa8.39□□□□□ -1.07
RNU4-55P-201ENST00000410731 PARP9Q8IXQ6 854 aa8.39□□□□□ -1.07
RNU4-55P-201ENST00000410731 SLC24A3Q9HC58 644 aa8.39□□□□□ -1.07
RNU4-55P-201ENST00000410731 KDM4AO75164 1064 aa8.38□□□□□ -1.07
RNU4-55P-201ENST00000410731 ADH1BP00325 375 aa8.38□□□□□ -1.07
RNU4-55P-201ENST00000410731 USP46P62068 366 aa8.38□□□□□ -1.07
RNU4-55P-201ENST00000410731 GRIPAP1Q4V328 841 aa8.38□□□□□ -1.07
RNU4-55P-201ENST00000410731 PPP1R18Q6NYC8 613 aa8.38□□□□□ -1.07
RNU4-55P-201ENST00000410731 SSTR3P32745 418 aaPredicted RBP8.37□□□□□ -1.07
RNU4-55P-201ENST00000410731 GGCXP38435 758 aa8.37□□□□□ -1.07
RNU4-55P-201ENST00000410731 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.37□□□□□ -1.07
RNU4-55P-201ENST00000410731 SLC27A5Q9Y2P5 690 aa8.36□□□□□ -1.07
RNU4-55P-201ENST00000410731 HOXA2O43364 376 aa8.35□□□□□ -1.07
RNU4-55P-201ENST00000410731 PDE4DQ08499 809 aa8.35□□□□□ -1.07
RNU4-55P-201ENST00000410731 THAP11Q96EK4 314 aa8.35□□□□□ -1.07
RNU4-55P-201ENST00000410731 SALL2Q9Y467 1007 aaPredicted RBP8.35□□□□□ -1.07
RNU4-55P-201ENST00000410731 SPSB2Q99619 263 aa8.34□□□□□ -1.07
RNU4-55P-201ENST00000410731 FMNL1O95466 1100 aaPredicted RBP8.33□□□□□ -1.08
RNU4-55P-201ENST00000410731 S1PR4O95977 384 aa8.33□□□□□ -1.08
RNU4-55P-201ENST00000410731 NUTM1Q86Y26 1132 aa8.33□□□□□ -1.08
RNU4-55P-201ENST00000410731 Q3C1V9 767 aa8.32□□□□□ -1.08
RNU4-55P-201ENST00000410731 BRICD5Q6PL45 260 aa8.32□□□□□ -1.08
RNU4-55P-201ENST00000410731 SLC6A16Q9GZN6 736 aa8.32□□□□□ -1.08
RNU4-55P-201ENST00000410731 RNF223E7ERA6 249 aa8.31□□□□□ -1.08
RNU4-55P-201ENST00000410731 MS4A1P11836 297 aa8.31□□□□□ -1.08
RNU4-55P-201ENST00000410731 RNF19BQ6ZMZ0 732 aa8.31□□□□□ -1.08
RNU4-55P-201ENST00000410731 HLA-CQ95604 372 aa8.31□□□□□ -1.08
RNU4-55P-201ENST00000410731 ANKLE1Q8NAG6 615 aa8.3□□□□□ -1.08
RNU4-55P-201ENST00000410731 SPIRE2Q8WWL2 714 aa8.3□□□□□ -1.08
RNU4-55P-201ENST00000410731 BEGAINQ9BUH8 593 aa8.3□□□□□ -1.08
RNU4-55P-201ENST00000410731 MSS51Q4VC12 460 aa8.29□□□□□ -1.08
RNU4-55P-201ENST00000410731 V9GY48 417 aaPredicted RBP8.29□□□□□ -1.08
RNU4-55P-201ENST00000410731 GUCA2AQ02747 115 aa8.28□□□□□ -1.08
RNU4-55P-201ENST00000410731 FAM160A2Q8N612 972 aaPredicted RBP8.28□□□□□ -1.08
RNU4-55P-201ENST00000410731 PRKD2Q9BZL6 878 aa8.28□□□□□ -1.08
RNU4-55P-201ENST00000410731 DIXDC1Q155Q3 683 aa8.27□□□□□ -1.09
RNU4-55P-201ENST00000410731 PPEF1O14829 653 aaPredicted RBP8.26□□□□□ -1.09
RNU4-55P-201ENST00000410731 FDX1P10109 184 aa8.26□□□□□ -1.09
RNU4-55P-201ENST00000410731 TBC1D2Q9BYX2 928 aa8.26□□□□□ -1.09
RNU4-55P-201ENST00000410731 PRDM9Q9NQV7 894 aa8.26□□□□□ -1.09
RNU4-55P-201ENST00000410731 MOXD2PA6NHM9 499 aa8.25□□□□□ -1.09
RNU4-55P-201ENST00000410731 USB1Q9BQ65 265 aaKnown RBP8.25□□□□□ -1.09
RNU4-55P-201ENST00000410731 GJA5P36382 358 aa8.24□□□□□ -1.09
RNU4-55P-201ENST00000410731 PCDHGC3Q9UN70 934 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms