RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 OATP04181 439 aa8.94□□□□□ -0.98
TRAV40-201ENST00000390467 PHOX2BQ99453 314 aa8.94□□□□□ -0.98
TRAV40-201ENST00000390467 MTRQ99707 1265 aa8.94□□□□□ -0.98
TRAV40-201ENST00000390467 KCNC4Q03721 635 aa8.93□□□□□ -0.98
TRAV40-201ENST00000390467 TULP1O00294 542 aaPredicted RBP8.92□□□□□ -0.98
TRAV40-201ENST00000390467 SLC10A3P09131 477 aa8.92□□□□□ -0.98
TRAV40-201ENST00000390467 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.92□□□□□ -0.98
TRAV40-201ENST00000390467 ZNF516Q92618 1163 aa8.91□□□□□ -0.98
TRAV40-201ENST00000390467 SLC4A3P48751 1232 aa8.9□□□□□ -0.98
TRAV40-201ENST00000390467 LMOD2Q6P5Q4 547 aa8.9□□□□□ -0.98
TRAV40-201ENST00000390467 NECTIN2Q92692 538 aa8.9□□□□□ -0.98
TRAV40-201ENST00000390467 CFHP08603 1231 aa8.89□□□□□ -0.99
TRAV40-201ENST00000390467 COPS2P61201 443 aa8.89□□□□□ -0.99
TRAV40-201ENST00000390467 MAP2K5Q13163 448 aa8.89□□□□□ -0.99
TRAV40-201ENST00000390467 IL21Q9HBE4 155 aa8.89□□□□□ -0.99
TRAV40-201ENST00000390467 BLOC1S3Q6QNY0 202 aa8.86□□□□□ -0.99
TRAV40-201ENST00000390467 NKX2-3Q8TAU0 364 aa8.86□□□□□ -0.99
TRAV40-201ENST00000390467 PCDHB3Q9Y5E6 796 aa8.86□□□□□ -0.99
TRAV40-201ENST00000390467 IRF6O14896 467 aa8.85□□□□□ -0.99
TRAV40-201ENST00000390467 CCDC102AQ96A19 550 aa8.85□□□□□ -0.99
TRAV40-201ENST00000390467 DAXXQ9UER7 740 aaPredicted RBP8.85□□□□□ -0.99
TRAV40-201ENST00000390467 ACTN4O43707 911 aaKnown RBP8.84□□□□□ -0.99
TRAV40-201ENST00000390467 PRR14Q9BWN1 585 aa8.84□□□□□ -0.99
TRAV40-201ENST00000390467 DDX11L8A8MPP1 907 aa8.83□□□□□ -1
TRAV40-201ENST00000390467 TLL1O43897 1013 aa8.83□□□□□ -1
TRAV40-201ENST00000390467 KMT5BQ4FZB7 885 aa8.83□□□□□ -1
TRAV40-201ENST00000390467 MINK1Q8N4C8 1332 aaPredicted RBP8.82□□□□□ -1
TRAV40-201ENST00000390467 ZPR1O75312 459 aa8.82□□□□□ -1
TRAV40-201ENST00000390467 RDH13Q8NBN7 331 aa8.81□□□□□ -1
TRAV40-201ENST00000390467 ZC3H15Q8WU90 426 aaKnown RBP8.81□□□□□ -1
TRAV40-201ENST00000390467 RGS20O76081 388 aa8.8□□□□□ -1
TRAV40-201ENST00000390467 MDM2Q00987 491 aaPredicted RBP8.79□□□□□ -1
TRAV40-201ENST00000390467 PUS10Q3MIT2 529 aaKnown RBP8.79□□□□□ -1
TRAV40-201ENST00000390467 PPP1R18Q6NYC8 613 aa8.79□□□□□ -1
TRAV40-201ENST00000390467 ZMYND10O75800 440 aa8.78□□□□□ -1
TRAV40-201ENST00000390467 BARGINQ6ZT62 677 aa8.77□□□□□ -1.01
TRAV40-201ENST00000390467 SLC24A1O60721 1099 aa8.76□□□□□ -1.01
TRAV40-201ENST00000390467 GCGRP47871 477 aa8.76□□□□□ -1.01
TRAV40-201ENST00000390467 FUT2Q10981 343 aa8.76□□□□□ -1.01
TRAV40-201ENST00000390467 RSPH4AQ5TD94 716 aa8.76□□□□□ -1.01
TRAV40-201ENST00000390467 SULF1Q8IWU6 871 aa8.76□□□□□ -1.01
TRAV40-201ENST00000390467 CD46P15529 392 aa8.75□□□□□ -1.01
TRAV40-201ENST00000390467 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.75□□□□□ -1.01
TRAV40-201ENST00000390467 TMUB1Q9BVT8 246 aa8.74□□□□□ -1.01
TRAV40-201ENST00000390467 REPIN1Q9BWE0 567 aaKnown RBP8.74□□□□□ -1.01
TRAV40-201ENST00000390467 NR1I2O75469 434 aa8.73□□□□□ -1.01
TRAV40-201ENST00000390467 MORN1Q5T089 497 aa8.73□□□□□ -1.01
TRAV40-201ENST00000390467 ADH1BP00325 375 aa8.72□□□□□ -1.01
TRAV40-201ENST00000390467 SCUBE3Q8IX30 993 aa8.72□□□□□ -1.01
TRAV40-201ENST00000390467 KRI1Q8N9T8 703 aaKnown RBP8.72□□□□□ -1.01
TRAV40-201ENST00000390467 S1PR4O95977 384 aa8.71□□□□□ -1.02
TRAV40-201ENST00000390467 GPCPD1Q9NPB8 672 aa8.71□□□□□ -1.02
TRAV40-201ENST00000390467 FAM217BQ9NTX9 383 aaPredicted RBP8.71□□□□□ -1.02
TRAV40-201ENST00000390467 RNF223E7ERA6 249 aa8.7□□□□□ -1.02
TRAV40-201ENST00000390467 CLCN1P35523 988 aa8.7□□□□□ -1.02
TRAV40-201ENST00000390467 ATP6V1AP38606 617 aa8.7□□□□□ -1.02
TRAV40-201ENST00000390467 PRKD2Q9BZL6 878 aa8.7□□□□□ -1.02
TRAV40-201ENST00000390467 SLC27A5Q9Y2P5 690 aa8.7□□□□□ -1.02
TRAV40-201ENST00000390467 HLA-CQ95604 372 aa8.69□□□□□ -1.02
TRAV40-201ENST00000390467 EMID1Q96A84 441 aaPredicted RBP8.69□□□□□ -1.02
TRAV40-201ENST00000390467 THAP11Q96EK4 314 aa8.69□□□□□ -1.02
TRAV40-201ENST00000390467 PPEF1O14829 653 aaPredicted RBP8.68□□□□□ -1.02
TRAV40-201ENST00000390467 GGCXP38435 758 aa8.68□□□□□ -1.02
TRAV40-201ENST00000390467 AMHR2Q16671 573 aa8.67□□□□□ -1.02
TRAV40-201ENST00000390467 RNF19BQ6ZMZ0 732 aa8.67□□□□□ -1.02
TRAV40-201ENST00000390467 SPSB2Q99619 263 aa8.67□□□□□ -1.02
TRAV40-201ENST00000390467 KDM4AO75164 1064 aa8.66□□□□□ -1.02
TRAV40-201ENST00000390467 IRX2Q9BZI1 471 aaPredicted RBP8.66□□□□□ -1.02
TRAV40-201ENST00000390467 SLC6A16Q9GZN6 736 aa8.66□□□□□ -1.02
TRAV40-201ENST00000390467 TTLL12Q14166 644 aaPredicted RBP8.65□□□□□ -1.02
TRAV40-201ENST00000390467 PRDM9Q9NQV7 894 aa8.65□□□□□ -1.02
TRAV40-201ENST00000390467 V9GY48 417 aaPredicted RBP8.65□□□□□ -1.02
TRAV40-201ENST00000390467 TRIM66O15016 1216 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 HOXA2O43364 376 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 PLA2G2CQ5R387 149 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 BRICD5Q6PL45 260 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 GIGYF2Q6Y7W6 1299 aaKnown RBP8.64□□□□□ -1.03
TRAV40-201ENST00000390467 PARP9Q8IXQ6 854 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 FAM160A2Q8N612 972 aaPredicted RBP8.64□□□□□ -1.03
TRAV40-201ENST00000390467 ANKLE1Q8NAG6 615 aa8.64□□□□□ -1.03
TRAV40-201ENST00000390467 FMNL1O95466 1100 aaPredicted RBP8.63□□□□□ -1.03
TRAV40-201ENST00000390467 GUCA2AQ02747 115 aa8.63□□□□□ -1.03
TRAV40-201ENST00000390467 SSTR3P32745 418 aaPredicted RBP8.62□□□□□ -1.03
TRAV40-201ENST00000390467 USP46P62068 366 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 GRIPAP1Q4V328 841 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 LIAT1Q6ZQX7 453 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 BCANQ96GW7 911 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 AK7Q96M32 723 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 SLC24A3Q9HC58 644 aa8.61□□□□□ -1.03
TRAV40-201ENST00000390467 SALL2Q9Y467 1007 aaPredicted RBP8.61□□□□□ -1.03
TRAV40-201ENST00000390467 SLC19A1P41440 591 aa8.59□□□□□ -1.03
TRAV40-201ENST00000390467 MS4A1P11836 297 aa8.58□□□□□ -1.04
TRAV40-201ENST00000390467 MSS51Q4VC12 460 aa8.58□□□□□ -1.04
TRAV40-201ENST00000390467 FCF1Q9Y324 198 aaKnown RBP8.58□□□□□ -1.04
TRAV40-201ENST00000390467 Q3C1V9 767 aa8.57□□□□□ -1.04
TRAV40-201ENST00000390467 TRIM67Q6ZTA4 783 aa8.57□□□□□ -1.04
TRAV40-201ENST00000390467 NUTM1Q86Y26 1132 aa8.57□□□□□ -1.04
TRAV40-201ENST00000390467 SPIRE2Q8WWL2 714 aa8.57□□□□□ -1.04
TRAV40-201ENST00000390467 PDE4DQ08499 809 aa8.56□□□□□ -1.04
TRAV40-201ENST00000390467 SPRYD7Q5W111 196 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms