RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ZNF330Q9Y3S2 320 aaPredicted RBP16.65■□□□□ 0.26
NPHP4-203ENST00000378169 HMOX1P09601 288 aa16.65■□□□□ 0.26
NPHP4-203ENST00000378169 MAGI1Q96QZ7 1491 aaPredicted RBP16.65■□□□□ 0.26
NPHP4-203ENST00000378169 CENPQQ7L2Z9 268 aaPredicted RBP16.65■□□□□ 0.26
NPHP4-203ENST00000378169 ZKSCAN2Q63HK3 967 aa16.64■□□□□ 0.25
NPHP4-203ENST00000378169 PTPRKQ15262 1439 aa16.64■□□□□ 0.25
NPHP4-203ENST00000378169 LMOD3Q0VAK6 560 aa16.63■□□□□ 0.25
NPHP4-203ENST00000378169 PTPN23Q9H3S7 1636 aa16.63■□□□□ 0.25
NPHP4-203ENST00000378169 RUNDC1Q96C34 613 aa16.62■□□□□ 0.25
NPHP4-203ENST00000378169 NCOA1Q15788 1441 aa16.62■□□□□ 0.25
NPHP4-203ENST00000378169 FGD1P98174 961 aa16.62■□□□□ 0.25
NPHP4-203ENST00000378169 CAMSAP2Q08AD1 1489 aa16.61■□□□□ 0.25
NPHP4-203ENST00000378169 TCP11L2Q8N4U5 519 aa16.61■□□□□ 0.25
NPHP4-203ENST00000378169 PANK1Q8TE04 598 aa16.6■□□□□ 0.25
NPHP4-203ENST00000378169 PRAM1Q96QH2 718 aa16.6■□□□□ 0.25
NPHP4-203ENST00000378169 AKNAQ7Z591 1439 aa16.6■□□□□ 0.25
NPHP4-203ENST00000378169 NAP1L2Q9ULW6 460 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-203ENST00000378169 GZF1Q9H116 711 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-203ENST00000378169 PLEKHH2Q8IVE3 1493 aa16.57■□□□□ 0.24
NPHP4-203ENST00000378169 FAM161AQ3B820 660 aa16.57■□□□□ 0.24
NPHP4-203ENST00000378169 ANKRD45Q5TZF3 282 aa16.57■□□□□ 0.24
NPHP4-203ENST00000378169 PLCB2Q00722 1185 aa16.56■□□□□ 0.24
NPHP4-203ENST00000378169 NECTIN2Q92692 538 aa16.56■□□□□ 0.24
NPHP4-203ENST00000378169 NUTM2GQ5VZR2 741 aa16.56■□□□□ 0.24
NPHP4-203ENST00000378169 CCDC141Q6ZP82 1450 aa16.56■□□□□ 0.24
NPHP4-203ENST00000378169 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
NPHP4-203ENST00000378169 DZIP1LQ8IYY4 767 aaKnown RBP16.56■□□□□ 0.24
NPHP4-203ENST00000378169 THOC2Q8NI27 1593 aaKnown RBP16.55■□□□□ 0.24
NPHP4-203ENST00000378169 TRIM6-TRIM34B2RNG4 842 aa16.55■□□□□ 0.24
NPHP4-203ENST00000378169 TXNDC2Q86VQ3 553 aa16.55■□□□□ 0.24
NPHP4-203ENST00000378169 NPHP1O15259 732 aa16.54■□□□□ 0.24
NPHP4-203ENST00000378169 HMMRO75330 724 aa16.54■□□□□ 0.24
NPHP4-203ENST00000378169 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
NPHP4-203ENST00000378169 NGEFQ8N5V2 710 aa16.54■□□□□ 0.24
NPHP4-203ENST00000378169 MCCP23508 829 aa16.53■□□□□ 0.24
NPHP4-203ENST00000378169 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
NPHP4-203ENST00000378169 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.52■□□□□ 0.24
NPHP4-203ENST00000378169 CABP1Q9NZU7 370 aa16.52■□□□□ 0.24
NPHP4-203ENST00000378169 KIAA1211Q6ZU35 1233 aa16.52■□□□□ 0.23
NPHP4-203ENST00000378169 BCAR3O75815 825 aa16.51■□□□□ 0.23
NPHP4-203ENST00000378169 NOL8Q76FK4 1167 aaKnown RBP16.5■□□□□ 0.23
NPHP4-203ENST00000378169 EIF2S2P20042 333 aaKnown RBP16.5■□□□□ 0.23
NPHP4-203ENST00000378169 DDX19BQ9UMR2 479 aa16.5■□□□□ 0.23
NPHP4-203ENST00000378169 CHMP3Q9Y3E7 222 aa16.5■□□□□ 0.23
NPHP4-203ENST00000378169 SLC52A1Q9NWF4 448 aa16.5■□□□□ 0.23
NPHP4-203ENST00000378169 TSR2Q969E8 191 aaKnown RBP16.49■□□□□ 0.23
NPHP4-203ENST00000378169 MAPKBP1O60336 1514 aa16.49■□□□□ 0.23
NPHP4-203ENST00000378169 GPATCH8Q9UKJ3 1502 aaKnown RBP16.49■□□□□ 0.23
NPHP4-203ENST00000378169 RPRD2Q5VT52 1461 aaKnown RBP16.49■□□□□ 0.23
NPHP4-203ENST00000378169 PRKAR2BP31323 418 aa16.49■□□□□ 0.23
NPHP4-203ENST00000378169 TEFQ10587 303 aa16.49■□□□□ 0.23
NPHP4-203ENST00000378169 NLRP6P59044 892 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 PSME1Q06323 249 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 SLC26A8Q96RN1 970 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 LNPKQ9C0E8 428 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 FANCIQ9NVI1 1328 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 CFAP44Q96MT7 982 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 CDK19Q9BWU1 502 aa16.47■□□□□ 0.23
NPHP4-203ENST00000378169 EXOSC9Q06265 439 aaKnown RBP16.46■□□□□ 0.23
NPHP4-203ENST00000378169 ADGRF5Q8IZF2 1346 aa16.46■□□□□ 0.23
NPHP4-203ENST00000378169 ZRSR1Q15695 479 aaKnown RBP16.46■□□□□ 0.23
NPHP4-203ENST00000378169 CHMP4AQ9BY43 222 aa16.45■□□□□ 0.22
NPHP4-203ENST00000378169 NUP153P49790 1475 aaKnown RBP16.44■□□□□ 0.22
NPHP4-203ENST00000378169 GNAI1P63096 354 aa16.44■□□□□ 0.22
NPHP4-203ENST00000378169 GOLGA6L4A6NEF3 574 aa16.43■□□□□ 0.22
NPHP4-203ENST00000378169 FKBP5Q13451 457 aaPredicted RBP16.43■□□□□ 0.22
NPHP4-203ENST00000378169 RILPL2Q969X0 211 aa16.43■□□□□ 0.22
NPHP4-203ENST00000378169 ATP10BO94823 1461 aa16.43■□□□□ 0.22
NPHP4-203ENST00000378169 GBP4Q96PP9 640 aa16.43■□□□□ 0.22
NPHP4-203ENST00000378169 KIF14Q15058 1648 aa16.42■□□□□ 0.22
NPHP4-203ENST00000378169 C1orf141Q5JVX7 400 aa16.42■□□□□ 0.22
NPHP4-203ENST00000378169 DNTTIP2Q5QJE6 756 aaKnown RBP16.42■□□□□ 0.22
NPHP4-203ENST00000378169 CD109Q6YHK3 1445 aa16.42■□□□□ 0.22
NPHP4-203ENST00000378169 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
NPHP4-203ENST00000378169 KIF16BQ96L93 1317 aa16.42■□□□□ 0.22
NPHP4-203ENST00000378169 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
NPHP4-203ENST00000378169 CCDC9Q9Y3X0 531 aaKnown RBP16.41■□□□□ 0.22
NPHP4-203ENST00000378169 FOXD4L5Q5VV16 416 aaPredicted RBP16.4■□□□□ 0.22
NPHP4-203ENST00000378169 FBXO31Q5XUX0 539 aaPredicted RBP16.4■□□□□ 0.22
NPHP4-203ENST00000378169 FOXD4L4Q8WXT5 416 aaPredicted RBP16.4■□□□□ 0.22
NPHP4-203ENST00000378169 IDI1Q13907 227 aa16.4■□□□□ 0.22
NPHP4-203ENST00000378169 WAPLQ7Z5K2 1190 aa16.4■□□□□ 0.22
NPHP4-203ENST00000378169 UGGT2Q9NYU1 1516 aa16.4■□□□□ 0.22
NPHP4-203ENST00000378169 ADGRL1O94910 1474 aa16.39■□□□□ 0.22
NPHP4-203ENST00000378169 SMG6Q86US8 1419 aaKnown RBP16.38■□□□□ 0.21
NPHP4-203ENST00000378169 GORABQ5T7V8 394 aa16.38■□□□□ 0.21
NPHP4-203ENST00000378169 RRS1Q15050 365 aaKnown RBP16.38■□□□□ 0.21
NPHP4-203ENST00000378169 SULT6B1Q6IMI4 303 aa16.38■□□□□ 0.21
NPHP4-203ENST00000378169 ABTB2Q8N961 1025 aa16.37■□□□□ 0.21
NPHP4-203ENST00000378169 SKAP1Q86WV1 359 aa16.37■□□□□ 0.21
NPHP4-203ENST00000378169 NAP1L5Q96NT1 182 aaPredicted RBP16.37■□□□□ 0.21
NPHP4-203ENST00000378169 NSD3Q9BZ95 1437 aa16.37■□□□□ 0.21
NPHP4-203ENST00000378169 L1TD1Q5T7N2 865 aaKnown RBP16.36■□□□□ 0.21
NPHP4-203ENST00000378169 HDAC5Q9UQL6 1122 aa16.36■□□□□ 0.21
NPHP4-203ENST00000378169 RPGRIP1LQ68CZ1 1315 aa16.36■□□□□ 0.21
NPHP4-203ENST00000378169 TAF7LQ5H9L4 462 aa16.36■□□□□ 0.21
NPHP4-203ENST00000378169 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
NPHP4-203ENST00000378169 C9orf78Q9NZ63 289 aaPredicted RBP16.35■□□□□ 0.21
NPHP4-203ENST00000378169 WWC1Q8IX03 1113 aa16.35■□□□□ 0.21
NPHP4-203ENST00000378169 C20orf194Q5TEA3 1177 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms