RNA–Protein interactions for RNA: ENST00000356183.8

GTF3C1-201, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-201ENST00000356183 BRPF3Q9ULD4 1205 aa13.44□□□□□ -0.26
GTF3C1-201ENST00000356183 SYNE3Q6ZMZ3 975 aa13.43□□□□□ -0.26
GTF3C1-201ENST00000356183 NLRP13Q86W25 1043 aa13.43□□□□□ -0.26
GTF3C1-201ENST00000356183 TCEAL9Q9UHQ7 104 aa13.43□□□□□ -0.26
GTF3C1-201ENST00000356183 PKD2Q13563 968 aa13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 CCDC66A2RUB6 948 aa13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 MAPK8IP2Q13387 824 aaPredicted RBP13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 ERCC6Q03468 1493 aa13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 CHMP5Q9NZZ3 219 aa13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 HOOK1Q9UJC3 728 aaKnown RBP13.42□□□□□ -0.26
GTF3C1-201ENST00000356183 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.41□□□□□ -0.266e-7■■■■■ 104.5
GTF3C1-201ENST00000356183 DIAPH3Q9NSV4 1193 aa13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 VPS37CA5D8V6 355 aaPredicted RBP13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 CUX2O14529 1486 aa13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 NASPP49321 788 aaPredicted RBP13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 CCDC47Q96A33 483 aaKnown RBP13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 CARMIL1Q5VZK9 1371 aa13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 HSP90AB2PQ58FF8 381 aa13.41□□□□□ -0.26
GTF3C1-201ENST00000356183 ELL2O00472 640 aaPredicted RBP13.4□□□□□ -0.26
GTF3C1-201ENST00000356183 DCTN1Q14203 1278 aa13.4□□□□□ -0.26
GTF3C1-201ENST00000356183 LTV1Q96GA3 475 aaPredicted RBP13.4□□□□□ -0.26
GTF3C1-201ENST00000356183 PHLDB1Q86UU1 1377 aa13.4□□□□□ -0.26
GTF3C1-201ENST00000356183 LEKR1Q6ZMV7 388 aa13.39□□□□□ -0.27
GTF3C1-201ENST00000356183 HDAC5Q9UQL6 1122 aa13.39□□□□□ -0.27
GTF3C1-201ENST00000356183 COG6Q9Y2V7 657 aa13.39□□□□□ -0.27
GTF3C1-201ENST00000356183 HDGFP51858 240 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-201ENST00000356183 TSPYL1Q9H0U9 437 aa13.39□□□□□ -0.27
GTF3C1-201ENST00000356183 RNF214Q8ND24 703 aa13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 MPHOSPH9Q99550 1183 aa13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 KDM4AO75164 1064 aa13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 CT47A1Q5JQC4 288 aaPredicted RBP13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 TOP2AP11388 1531 aaKnown RBP13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 FMN1Q68DA7 1419 aa13.38□□□□□ -0.27
GTF3C1-201ENST00000356183 MTERF4Q7Z6M4 381 aaKnown RBP13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 SMC3Q9UQE7 1217 aa13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 MYBBP1AQ9BQG0 1328 aaKnown RBP13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 L3MBTL2Q969R5 705 aa13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 ODF2Q5BJF6 829 aa13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 EIF3AQ14152 1382 aaKnown RBP13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 KIF15Q9NS87 1388 aa13.37□□□□□ -0.27
GTF3C1-201ENST00000356183 NFXL1Q6ZNB6 911 aa13.36□□□□□ -0.27
GTF3C1-201ENST00000356183 WIZO95785 1651 aa13.36□□□□□ -0.27
GTF3C1-201ENST00000356183 LMOD3Q0VAK6 560 aa13.36□□□□□ -0.27
GTF3C1-201ENST00000356183 CPLX1O14810 134 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 NUTM2DQ5VT03 806 aaPredicted RBP13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 ERCC4Q92889 916 aaPredicted RBP13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 MRE11P49959 708 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 ZFYVE27Q5T4F4 411 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 CHMP4CQ96CF2 233 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 AXDND1Q5T1B0 1012 aaPredicted RBP13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 NGEFQ8N5V2 710 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 CGNL1Q0VF96 1302 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 OLFM4Q6UX06 510 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 KRI1Q8N9T8 703 aaKnown RBP13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 ZKSCAN2Q63HK3 967 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 CNKSR2Q8WXI2 1034 aa13.35□□□□□ -0.27
GTF3C1-201ENST00000356183 EPS15P42566 896 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 DHX16O60231 1041 aaKnown RBP13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 RUFY2Q8WXA3 655 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 REC8O95072 547 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 SPC24Q8NBT2 197 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 CCDC27Q2M243 656 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 GGT6Q6P531 493 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 NECTIN2Q92692 538 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 SMC2O95347 1197 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 CHMP4AQ9BY43 222 aa13.34□□□□□ -0.27
GTF3C1-201ENST00000356183 ZKSCAN1P17029 563 aaPredicted RBP13.33□□□□□ -0.28
GTF3C1-201ENST00000356183 GTF2E1P29083 439 aaPredicted RBP13.33□□□□□ -0.28
GTF3C1-201ENST00000356183 AMPHP49418 695 aa13.33□□□□□ -0.28
GTF3C1-201ENST00000356183 CCDC73Q6ZRK6 1079 aa13.33□□□□□ -0.28
GTF3C1-201ENST00000356183 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.33□□□□□ -0.28
GTF3C1-201ENST00000356183 NUCB2P80303 420 aa13.32□□□□□ -0.28
GTF3C1-201ENST00000356183 CPLX2Q6PUV4 134 aaKnown RBP13.32□□□□□ -0.28
GTF3C1-201ENST00000356183 TRIM34Q9BYJ4 488 aa13.32□□□□□ -0.28
GTF3C1-201ENST00000356183 CAVIN1Q6NZI2 390 aaKnown RBP13.32□□□□□ -0.28
GTF3C1-201ENST00000356183 CTDP1Q9Y5B0 961 aaPredicted RBP13.32□□□□□ -0.28
GTF3C1-201ENST00000356183 MSH5O43196 834 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 NAT10Q9H0A0 1025 aaKnown RBP13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 ERICH4A6NGS2 130 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 CCDC173Q0VFZ6 552 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 IFIT2P09913 472 aaKnown RBP13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 AMOTL1Q8IY63 956 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 TSPY26PQ9H489 355 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 TRIM5Q9C035 493 aa13.31□□□□□ -0.28
GTF3C1-201ENST00000356183 C22orf23Q9BZE7 217 aa13.3□□□□□ -0.28
GTF3C1-201ENST00000356183 TRAK2O60296 914 aa13.3□□□□□ -0.28
GTF3C1-201ENST00000356183 INTS3Q68E01 1043 aaKnown RBP13.3□□□□□ -0.28
GTF3C1-201ENST00000356183 TERF2IPQ9NYB0 399 aa13.3□□□□□ -0.28
GTF3C1-201ENST00000356183 UQCRHLA0A096LP55 91 aa13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 RRP9O43818 475 aaKnown RBP13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 UQCRHP07919 91 aa13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 MYO6Q9UM54 1294 aa13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 E9PSI1 815 aa13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 KIAA0754O94854 1291 aa13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 CT47B1P0C2W7 299 aaPredicted RBP13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 EIF2S2P20042 333 aaKnown RBP13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 NOL10Q9BSC4 688 aaKnown RBP13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 BRPF1P55201 1214 aaPredicted RBP13.29□□□□□ -0.28
GTF3C1-201ENST00000356183 ERICH2A1L162 156 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms