RNA–Protein interactions for RNA: ENST00000348513.10

SMARCE1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCE1, Length 5,840 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-202ENST00000348513 PDE4AP27815 886 aa13.61□□□□□ -0.23
SMARCE1-202ENST00000348513 HMMRO75330 724 aa13.61□□□□□ -0.23
SMARCE1-202ENST00000348513 FRAT2O75474 233 aaPredicted RBP13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 COG3Q96JB2 828 aa13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 PLIN1O60240 522 aa13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 EVA1CP58658 441 aa13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 TOMM22Q9NS69 142 aa13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 LMOD3Q0VAK6 560 aa13.6□□□□□ -0.23
SMARCE1-202ENST00000348513 KIF15Q9NS87 1388 aa13.59□□□□□ -0.23
SMARCE1-202ENST00000348513 SMARCA4P51532 1647 aa13.59□□□□□ -0.23
SMARCE1-202ENST00000348513 NEFHP12036 1026 aa13.58□□□□□ -0.23
SMARCE1-202ENST00000348513 AAMPQ13685 434 aa13.58□□□□□ -0.23
SMARCE1-202ENST00000348513 FOXD4L5Q5VV16 416 aaPredicted RBP13.58□□□□□ -0.23
SMARCE1-202ENST00000348513 FOXD4L4Q8WXT5 416 aaPredicted RBP13.58□□□□□ -0.23
SMARCE1-202ENST00000348513 NECTIN2Q92692 538 aa13.58□□□□□ -0.24
SMARCE1-202ENST00000348513 STK11IPQ8N1F8 1099 aa13.58□□□□□ -0.24
SMARCE1-202ENST00000348513 GPATCH11Q8N954 259 aa13.58□□□□□ -0.24
SMARCE1-202ENST00000348513 MYBBP1AQ9BQG0 1328 aaKnown RBP13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 VGFO15240 615 aaPredicted RBP13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 SLC4A3P48751 1232 aa13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 C1orf141Q5JVX7 400 aa13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 NOC3LQ8WTT2 800 aaKnown RBP13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 LETM1O95202 739 aaPredicted RBP13.57□□□□□ -0.24
SMARCE1-202ENST00000348513 EVC2Q86UK5 1308 aa13.56□□□□□ -0.24
SMARCE1-202ENST00000348513 DIAPH3Q9NSV4 1193 aa13.56□□□□□ -0.24
SMARCE1-202ENST00000348513 CCDC39Q9UFE4 941 aa13.56□□□□□ -0.24
SMARCE1-202ENST00000348513 EIF2S2P20042 333 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-202ENST00000348513 CALCOCO1Q9P1Z2 691 aa13.56□□□□□ -0.24
SMARCE1-202ENST00000348513 SSR1P43307 286 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 CGNL1Q0VF96 1302 aa13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 RAD54L2Q9Y4B4 1467 aa13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 PHF14O94880 888 aa13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 DHX37Q8IY37 1157 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 DHX57Q6P158 1386 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 ZNF644Q9H582 1327 aaPredicted RBP13.55□□□□□ -0.24
SMARCE1-202ENST00000348513 FAM69CQ0P6D2 419 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 RILPL2Q969X0 211 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 KIF3AQ9Y496 699 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 HMGN5P82970 282 aaKnown RBP13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 CCDC173Q0VFZ6 552 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 GTF2A1P52655 376 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 FAM193AP78312 1265 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 USP47Q96K76 1375 aa13.54□□□□□ -0.24
SMARCE1-202ENST00000348513 SYTL4Q96C24 671 aaPredicted RBP13.53□□□□□ -0.24
SMARCE1-202ENST00000348513 CREBRFQ8IUR6 639 aa13.53□□□□□ -0.24
SMARCE1-202ENST00000348513 UACAQ9BZF9 1416 aa13.53□□□□□ -0.24
SMARCE1-202ENST00000348513 HDAC5Q9UQL6 1122 aa13.53□□□□□ -0.24
SMARCE1-202ENST00000348513 SMAP1Q8IYB5 467 aaPredicted RBP13.52□□□□□ -0.24
SMARCE1-202ENST00000348513 RASSF8Q8NHQ8 419 aa13.52□□□□□ -0.24
SMARCE1-202ENST00000348513 TEFQ10587 303 aa13.52□□□□□ -0.25
SMARCE1-202ENST00000348513 ANKRD45Q5TZF3 282 aa13.52□□□□□ -0.25
SMARCE1-202ENST00000348513 USP8P40818 1118 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 PSME1Q06323 249 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 FGD5Q6ZNL6 1462 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 PHLDB1Q86UU1 1377 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 APAF1O14727 1248 aa13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
SMARCE1-202ENST00000348513 GAPVD1Q14C86 1478 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 PDE3BQ13370 1112 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 VPS53Q5VIR6 699 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 GIMAP7Q8NHV1 300 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 HSP90AB3PQ58FF7 597 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 NUTM2GQ5VZR2 741 aa13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 ARGLU1Q9NWB6 273 aaPredicted RBP13.5□□□□□ -0.25
SMARCE1-202ENST00000348513 CBX1P83916 185 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 TTC5Q8N0Z6 440 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 COG6Q9Y2V7 657 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 ESPNB1AK53 854 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 FOXD4L6Q3SYB3 417 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 FOXD4L3Q6VB84 417 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 TNNT1P13805 278 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 PLCD4Q9BRC7 762 aa13.49□□□□□ -0.25
SMARCE1-202ENST00000348513 LEKR1Q6ZMV7 388 aa13.48□□□□□ -0.25
SMARCE1-202ENST00000348513 EXOC6Q8TAG9 804 aa13.48□□□□□ -0.25
SMARCE1-202ENST00000348513 CRBNQ96SW2 442 aa13.48□□□□□ -0.25
SMARCE1-202ENST00000348513 PRKRIP1Q9H875 184 aaPredicted RBP13.48□□□□□ -0.25
SMARCE1-202ENST00000348513 TIGD1Q96MW7 591 aa13.48□□□□□ -0.25
SMARCE1-202ENST00000348513 BCCIPQ9P287 314 aaKnown RBP eCLIP13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 AQRO60306 1485 aaKnown RBP eCLIP13.47□□□□□ -0.255e-8■■■□□ 18.8
SMARCE1-202ENST00000348513 MEX3CQ5U5Q3 659 aaKnown RBP13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 ERICH4A6NGS2 130 aa13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 DIAPH1O60610 1272 aaKnown RBP13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 FAM161AQ3B820 660 aa13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 ZKSCAN2Q63HK3 967 aa13.47□□□□□ -0.25
SMARCE1-202ENST00000348513 NASPP49321 788 aaPredicted RBP13.46□□□□□ -0.25
SMARCE1-202ENST00000348513 KIF16BQ96L93 1317 aa13.46□□□□□ -0.25
SMARCE1-202ENST00000348513 HMOX1P09601 288 aa13.46□□□□□ -0.25
SMARCE1-202ENST00000348513 RIPK4P57078 832 aa13.46□□□□□ -0.25
SMARCE1-202ENST00000348513 DDX49Q9Y6V7 483 aaKnown RBP13.46□□□□□ -0.26
SMARCE1-202ENST00000348513 RAD21O60216 631 aa13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 C9orf78Q9NZ63 289 aaPredicted RBP13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 TMEM132EQ6IEE7 984 aa13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 AK7Q96M32 723 aa13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 MARCH6O60337 910 aa13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 ST18O60284 1047 aa13.45□□□□□ -0.26
SMARCE1-202ENST00000348513 IGF1RP08069 1367 aa13.44□□□□□ -0.26
SMARCE1-202ENST00000348513 VGLL3A8MV65 326 aa13.44□□□□□ -0.26
SMARCE1-202ENST00000348513 CABP2Q9NPB3 220 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms