RNA–Protein interactions for RNA: ENST00000338995.10

COMMD4-202, Transcript of COMM domain containing 4, humanhuman

TSL 2 BASIC

Gene COMMD4, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-202ENST00000338995 MSH6P52701 1360 aa21.81■■□□□ 1.08
COMMD4-202ENST00000338995 TET3O43151 1660 aa21.8■■□□□ 1.08
COMMD4-202ENST00000338995 RBM33Q96EV2 1170 aaKnown RBP21.8■■□□□ 1.08
COMMD4-202ENST00000338995 ADGRB3O60242 1522 aa21.8■■□□□ 1.08
COMMD4-202ENST00000338995 SLAIN2Q9P270 581 aa21.79■■□□□ 1.08
COMMD4-202ENST00000338995 TBX22Q9Y458 520 aa21.79■■□□□ 1.08
COMMD4-202ENST00000338995 PLEKHG1Q9ULL1 1385 aa21.77■■□□□ 1.08
COMMD4-202ENST00000338995 C14orf37Q86TY3 774 aa21.76■■□□□ 1.07
COMMD4-202ENST00000338995 RIMS2Q9UQ26 1411 aa21.76■■□□□ 1.07
COMMD4-202ENST00000338995 NKTRP30414 1462 aaKnown RBP21.76■■□□□ 1.07
COMMD4-202ENST00000338995 XIRP1Q702N8 1843 aaKnown RBP21.76■■□□□ 1.07
COMMD4-202ENST00000338995 ROCK1Q13464 1354 aa21.74■■□□□ 1.07
COMMD4-202ENST00000338995 ZFYVE9O95405 1425 aa21.72■■□□□ 1.07
COMMD4-202ENST00000338995 ITGAEP38570 1179 aa21.71■■□□□ 1.07
COMMD4-202ENST00000338995 RGS17Q9UGC6 210 aaPredicted RBP21.71■■□□□ 1.07
COMMD4-202ENST00000338995 NUP155O75694 1391 aa21.7■■□□□ 1.06
COMMD4-202ENST00000338995 NCOA3Q9Y6Q9 1424 aa21.7■■□□□ 1.06
COMMD4-202ENST00000338995 ATF3P18847 181 aa21.68■■□□□ 1.06
COMMD4-202ENST00000338995 NUTM2DQ5VT03 806 aaPredicted RBP21.68■■□□□ 1.06
COMMD4-202ENST00000338995 CADPS2Q86UW7 1296 aa21.68■■□□□ 1.06
COMMD4-202ENST00000338995 C19orf44Q9H6X5 657 aa21.68■■□□□ 1.06
COMMD4-202ENST00000338995 NWD1Q149M9 1564 aa21.67■■□□□ 1.06
COMMD4-202ENST00000338995 PIK3R4Q99570 1358 aa21.66■■□□□ 1.06
COMMD4-202ENST00000338995 ROBO1Q9Y6N7 1651 aa21.66■■□□□ 1.06
COMMD4-202ENST00000338995 TMEM131LA2VDJ0 1609 aa21.66■■□□□ 1.06
COMMD4-202ENST00000338995 JCADQ9P266 1359 aa21.65■■□□□ 1.06
COMMD4-202ENST00000338995 GCC2Q8IWJ2 1684 aa21.65■■□□□ 1.06
COMMD4-202ENST00000338995 UNC13BO14795 1591 aa21.63■■□□□ 1.05
COMMD4-202ENST00000338995 AMOTL2Q9Y2J4 779 aa21.63■■□□□ 1.05
COMMD4-202ENST00000338995 CHD2O14647 1828 aaKnown RBP21.63■■□□□ 1.05
COMMD4-202ENST00000338995 POTEAQ6S8J7 498 aa21.62■■□□□ 1.05
COMMD4-202ENST00000338995 ZNF326Q5BKZ1 582 aaKnown RBP21.61■■□□□ 1.05
COMMD4-202ENST00000338995 MYO5BQ9ULV0 1848 aa21.61■■□□□ 1.05
COMMD4-202ENST00000338995 ADAMTS13Q76LX8 1427 aa21.58■■□□□ 1.05
COMMD4-202ENST00000338995 MEX3CQ5U5Q3 659 aaKnown RBP21.58■■□□□ 1.05
COMMD4-202ENST00000338995 SPATA31A6Q5VVP1 1343 aa21.57■■□□□ 1.04
COMMD4-202ENST00000338995 E9PCH4 1651 aa21.57■■□□□ 1.04
COMMD4-202ENST00000338995 PPARGC1BQ86YN6 1023 aaKnown RBP21.57■■□□□ 1.04
COMMD4-202ENST00000338995 IQGAP3Q86VI3 1631 aa21.57■■□□□ 1.04
COMMD4-202ENST00000338995 DIP2AQ14689 1571 aa21.57■■□□□ 1.04
COMMD4-202ENST00000338995 PHLPP1O60346 1717 aa21.55■■□□□ 1.04
COMMD4-202ENST00000338995 ZNF772Q68DY9 489 aaPredicted RBP21.53■■□□□ 1.04
COMMD4-202ENST00000338995 TRPM2O94759 1503 aa21.53■■□□□ 1.04
COMMD4-202ENST00000338995 BRINP3Q76B58 766 aa21.48■■□□□ 1.03
COMMD4-202ENST00000338995 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-202ENST00000338995 DCCP43146 1447 aa21.46■■□□□ 1.03
COMMD4-202ENST00000338995 PTPRUQ92729 1446 aa21.46■■□□□ 1.03
COMMD4-202ENST00000338995 VGFO15240 615 aaPredicted RBP21.45■■□□□ 1.02
COMMD4-202ENST00000338995 TRIM52Q96A61 297 aa21.45■■□□□ 1.02
COMMD4-202ENST00000338995 LRRC59Q96AG4 307 aaKnown RBP21.45■■□□□ 1.02
COMMD4-202ENST00000338995 NUTM2BA6NNL0 878 aaPredicted RBP21.44■■□□□ 1.02
COMMD4-202ENST00000338995 NUTM2EB1AL46 878 aaPredicted RBP21.44■■□□□ 1.02
COMMD4-202ENST00000338995 NUTM2AQ8IVF1 878 aaPredicted RBP21.44■■□□□ 1.02
COMMD4-202ENST00000338995 COL16A1Q07092 1604 aaPredicted RBP21.44■■□□□ 1.02
COMMD4-202ENST00000338995 AHDC1Q5TGY3 1603 aaPredicted RBP21.41■■□□□ 1.02
COMMD4-202ENST00000338995 METP08581 1390 aa21.41■■□□□ 1.02
COMMD4-202ENST00000338995 RXRBP28702 533 aa21.41■■□□□ 1.02
COMMD4-202ENST00000338995 SETBP1Q9Y6X0 1596 aa21.4■■□□□ 1.02
COMMD4-202ENST00000338995 SPHKAPQ2M3C7 1700 aa21.4■■□□□ 1.02
COMMD4-202ENST00000338995 RPGRIP1LQ68CZ1 1315 aa21.38■■□□□ 1.01
COMMD4-202ENST00000338995 SLC4A1APQ9BWU0 796 aaKnown RBP21.37■■□□□ 1.01
COMMD4-202ENST00000338995 RRBP1Q9P2E9 1410 aaKnown RBP21.36■■□□□ 1.01
COMMD4-202ENST00000338995 LRP6O75581 1613 aa21.35■■□□□ 1.01
COMMD4-202ENST00000338995 MST1RQ04912 1400 aa21.35■■□□□ 1.01
COMMD4-202ENST00000338995 NAIPQ13075 1403 aa21.35■■□□□ 1.01
COMMD4-202ENST00000338995 SETD5Q9C0A6 1442 aa21.35■■□□□ 1.01
COMMD4-202ENST00000338995 SHPRHQ149N8 1683 aa21.34■■□□□ 1.01
COMMD4-202ENST00000338995 ADGRL3Q9HAR2 1447 aa21.33■■□□□ 1.01
COMMD4-202ENST00000338995 ASXL1Q8IXJ9 1541 aa21.33■■□□□ 1
COMMD4-202ENST00000338995 NRXN3Q9Y4C0 1643 aa21.33■■□□□ 1
COMMD4-202ENST00000338995 XRN1Q8IZH2 1706 aaKnown RBP21.32■■□□□ 1
COMMD4-202ENST00000338995 AFF2P51816 1311 aa21.32■■□□□ 1
COMMD4-202ENST00000338995 KIF1BO60333 1816 aa21.31■■□□□ 1
COMMD4-202ENST00000338995 UPF1Q92900 1129 aaKnown RBP eCLIP21.3■■□□□ 17e-14■■■■■ 92.7
COMMD4-202ENST00000338995 C8orf37Q96NL8 207 aa21.3■■□□□ 1
COMMD4-202ENST00000338995 NEXMIFQ5QGS0 1516 aa21.29■■□□□ 1
COMMD4-202ENST00000338995 QTRT2Q9H974 415 aaKnown RBP21.29■■□□□ 1
COMMD4-202ENST00000338995 CLTCL1P53675 1640 aa21.29■■□□□ 1
COMMD4-202ENST00000338995 DDX17Q92841 729 aaKnown RBP21.28■■□□□ 1
COMMD4-202ENST00000338995 NGLY1Q96IV0 654 aa21.28■■□□□ 1
COMMD4-202ENST00000338995 RBM6P78332 1123 aaKnown RBP21.27■■□□□ 1
COMMD4-202ENST00000338995 HFM1A2PYH4 1435 aa21.26■□□□□ 0.99
COMMD4-202ENST00000338995 C1orf167Q5SNV9 1468 aa21.26■□□□□ 0.99
COMMD4-202ENST00000338995 PNPLA6Q8IY17 1366 aa21.24■□□□□ 0.99
COMMD4-202ENST00000338995 PTCH1Q13635 1447 aa21.24■□□□□ 0.99
COMMD4-202ENST00000338995 ADAMTS2O95450 1211 aa21.24■□□□□ 0.99
COMMD4-202ENST00000338995 ORAI2Q96SN7 254 aa21.24■□□□□ 0.99
COMMD4-202ENST00000338995 CDK12Q9NYV4 1490 aaPredicted RBP21.24■□□□□ 0.99
COMMD4-202ENST00000338995 ROBO2Q9HCK4 1378 aa21.23■□□□□ 0.99
COMMD4-202ENST00000338995 SETD1AO15047 1707 aaKnown RBP21.22■□□□□ 0.99
COMMD4-202ENST00000338995 SOS2Q07890 1332 aaPredicted RBP21.22■□□□□ 0.99
COMMD4-202ENST00000338995 NHSL1Q5SYE7 1610 aa21.22■□□□□ 0.99
COMMD4-202ENST00000338995 RGL3Q3MIN7 710 aa21.2■□□□□ 0.98
COMMD4-202ENST00000338995 ESCO1Q5FWF5 840 aa21.2■□□□□ 0.98
COMMD4-202ENST00000338995 ACIN1Q9UKV3 1341 aaKnown RBP21.2■□□□□ 0.98
COMMD4-202ENST00000338995 USP21Q9UK80 565 aa21.18■□□□□ 0.98
COMMD4-202ENST00000338995 NPHP3Q7Z494 1330 aa21.18■□□□□ 0.98
COMMD4-202ENST00000338995 FOXD1Q16676 465 aa21.17■□□□□ 0.98
COMMD4-202ENST00000338995 STK26Q9P289 416 aa21.17■□□□□ 0.98
COMMD4-202ENST00000338995 TRPC5Q9UL62 973 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms