RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 NAP1L1P55209 391 aaKnown RBP11.93□□□□□ -0.5
COL4A6-201ENST00000334504 CHMP4CQ96CF2 233 aa11.93□□□□□ -0.5
COL4A6-201ENST00000334504 RRP9O43818 475 aaKnown RBP11.93□□□□□ -0.5
COL4A6-201ENST00000334504 WRNQ14191 1432 aaPredicted RBP eCLIP11.93□□□□□ -0.5
COL4A6-201ENST00000334504 AKAP17AQ02040 695 aaKnown RBP11.92□□□□□ -0.5
COL4A6-201ENST00000334504 ZKSCAN2Q63HK3 967 aa11.92□□□□□ -0.5
COL4A6-201ENST00000334504 ERCC4Q92889 916 aaPredicted RBP11.92□□□□□ -0.5
COL4A6-201ENST00000334504 VPS37CA5D8V6 355 aaPredicted RBP11.92□□□□□ -0.5
COL4A6-201ENST00000334504 REC8O95072 547 aa11.92□□□□□ -0.5
COL4A6-201ENST00000334504 TSPYL1Q9H0U9 437 aa11.92□□□□□ -0.5
COL4A6-201ENST00000334504 KIF15Q9NS87 1388 aa11.92□□□□□ -0.5
COL4A6-201ENST00000334504 CCDC173Q0VFZ6 552 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 KIF27Q86VH2 1401 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 MPHOSPH9Q99550 1183 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 SKIDA1Q1XH10 827 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 CAGE1Q8TC20 777 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 HOOK1Q9UJC3 728 aaKnown RBP11.91□□□□□ -0.5
COL4A6-201ENST00000334504 ARHGAP35Q9NRY4 1499 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 CGNL1Q0VF96 1302 aa11.91□□□□□ -0.5
COL4A6-201ENST00000334504 PDILTQ8N807 584 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 CHMP4AQ9BY43 222 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 TRIM29Q14134 588 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 C22orf23Q9BZE7 217 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 SMC3Q9UQE7 1217 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 FOSBP53539 338 aa11.9□□□□□ -0.5
COL4A6-201ENST00000334504 UQCRHLA0A096LP55 91 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 UQCRHP07919 91 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 CAVIN1Q6NZI2 390 aaKnown RBP11.89□□□□□ -0.51
COL4A6-201ENST00000334504 E9PSI1 815 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 FRAT2O75474 233 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-201ENST00000334504 HMGN5P82970 282 aaKnown RBP11.89□□□□□ -0.51
COL4A6-201ENST00000334504 LMOD3Q0VAK6 560 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 CCDC47Q96A33 483 aaKnown RBP11.89□□□□□ -0.51
COL4A6-201ENST00000334504 TTLL5Q6EMB2 1281 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 GGT6Q6P531 493 aa11.89□□□□□ -0.51
COL4A6-201ENST00000334504 FHAD1B1AJZ9 1412 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 SYNE3Q6ZMZ3 975 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 TSPY26PQ9H489 355 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 DCAF8L1A6NGE4 600 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 ELL2O00472 640 aaPredicted RBP11.88□□□□□ -0.51
COL4A6-201ENST00000334504 CCDC73Q6ZRK6 1079 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 CNKSR2Q8WXI2 1034 aa11.88□□□□□ -0.51
COL4A6-201ENST00000334504 ZKSCAN1P17029 563 aaPredicted RBP11.88□□□□□ -0.51
COL4A6-201ENST00000334504 NUTM2FA1L443 756 aa11.87□□□□□ -0.51
COL4A6-201ENST00000334504 RUFY2Q8WXA3 655 aa11.87□□□□□ -0.51
COL4A6-201ENST00000334504 EIF3AQ14152 1382 aaKnown RBP11.87□□□□□ -0.51
COL4A6-201ENST00000334504 AXDND1Q5T1B0 1012 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-201ENST00000334504 TRIM5Q9C035 493 aa11.87□□□□□ -0.51
COL4A6-201ENST00000334504 KANK4Q5T7N3 995 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-201ENST00000334504 RAD21O60216 631 aa11.86□□□□□ -0.51
COL4A6-201ENST00000334504 L3MBTL2Q969R5 705 aa11.86□□□□□ -0.51
COL4A6-201ENST00000334504 DHX37Q8IY37 1157 aaKnown RBP11.86□□□□□ -0.51
COL4A6-201ENST00000334504 NAT10Q9H0A0 1025 aaKnown RBP11.86□□□□□ -0.51
COL4A6-201ENST00000334504 ERICH4A6NGS2 130 aa11.86□□□□□ -0.51
COL4A6-201ENST00000334504 CPLX2Q6PUV4 134 aaKnown RBP11.86□□□□□ -0.51
COL4A6-201ENST00000334504 CPLX1O14810 134 aa11.85□□□□□ -0.51
COL4A6-201ENST00000334504 INTS3Q68E01 1043 aaKnown RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 SPC24Q8NBT2 197 aa11.85□□□□□ -0.51
COL4A6-201ENST00000334504 UBE2Q2Q8WVN8 375 aa11.85□□□□□ -0.51
COL4A6-201ENST00000334504 LETM1O95202 739 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 GTF2E1P29083 439 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 NUTM2DQ5VT03 806 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 HDGFP51858 240 aaKnown RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 OLFM4Q6UX06 510 aa11.85□□□□□ -0.51
COL4A6-201ENST00000334504 PRKRIP1Q9H875 184 aaPredicted RBP11.85□□□□□ -0.51
COL4A6-201ENST00000334504 DDX19BQ9UMR2 479 aa11.85□□□□□ -0.51
COL4A6-201ENST00000334504 KIAA0754O94854 1291 aa11.84□□□□□ -0.51
COL4A6-201ENST00000334504 SMC2O95347 1197 aa11.84□□□□□ -0.51
COL4A6-201ENST00000334504 TAF3Q5VWG9 929 aa11.84□□□□□ -0.51
COL4A6-201ENST00000334504 LTV1Q96GA3 475 aaPredicted RBP11.83□□□□□ -0.52
COL4A6-201ENST00000334504 PRPF40AO75400 957 aaKnown RBP11.83□□□□□ -0.52
COL4A6-201ENST00000334504 PRDM10Q9NQV6 1147 aa11.83□□□□□ -0.52
COL4A6-201ENST00000334504 VPS8Q8N3P4 1428 aa11.83□□□□□ -0.52
COL4A6-201ENST00000334504 CT47B1P0C2W7 299 aaPredicted RBP11.82□□□□□ -0.52
COL4A6-201ENST00000334504 PANK3Q9H999 370 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 CWC22Q9HCG8 908 aaKnown RBP11.82□□□□□ -0.52
COL4A6-201ENST00000334504 PPP1R1BQ9UD71 204 aaPredicted RBP11.82□□□□□ -0.52
COL4A6-201ENST00000334504 CCP110O43303 1012 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 CCDC27Q2M243 656 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 HSP90AB2PQ58FF8 381 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 DZIP1LQ8IYY4 767 aaKnown RBP11.82□□□□□ -0.52
COL4A6-201ENST00000334504 DEF6Q9H4E7 631 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 SAMD1Q6SPF0 538 aaPredicted RBP11.82□□□□□ -0.52
COL4A6-201ENST00000334504 GRPEL1Q9HAV7 217 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 TERF2IPQ9NYB0 399 aa11.82□□□□□ -0.52
COL4A6-201ENST00000334504 RNF20Q5VTR2 975 aa11.81□□□□□ -0.52
COL4A6-201ENST00000334504 MPNDQ8N594 471 aa11.81□□□□□ -0.52
COL4A6-201ENST00000334504 CCDC112Q8NEF3 446 aa11.81□□□□□ -0.52
COL4A6-201ENST00000334504 LNPKQ9C0E8 428 aa11.81□□□□□ -0.52
COL4A6-201ENST00000334504 CT47A1Q5JQC4 288 aaPredicted RBP11.81□□□□□ -0.52
COL4A6-201ENST00000334504 AEBP1Q8IUX7 1158 aa11.81□□□□□ -0.52
COL4A6-201ENST00000334504 NUP155O75694 1391 aa11.8□□□□□ -0.52
COL4A6-201ENST00000334504 MBD3O95983 291 aa11.8□□□□□ -0.52
COL4A6-201ENST00000334504 IFIT2P09913 472 aaKnown RBP11.8□□□□□ -0.52
COL4A6-201ENST00000334504 NFXL1Q6ZNB6 911 aa11.8□□□□□ -0.52
COL4A6-201ENST00000334504 SDF4Q9BRK5 362 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 EVA1CP58658 441 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 MYO6Q9UM54 1294 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 NACADO15069 1562 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 APAF1O14727 1248 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms