RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ADGRD1Q6QNK2 874 aa7.1□□□□□ -1.27
HMGB1-201ENST00000326004 GOPCQ9HD26 462 aa7.1□□□□□ -1.27
HMGB1-201ENST00000326004 BEGAINQ9BUH8 593 aa7.09□□□□□ -1.27
HMGB1-201ENST00000326004 SEPT9Q9UHD8 586 aaPredicted RBP7.09□□□□□ -1.27
HMGB1-201ENST00000326004 CD46P15529 392 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 SLC4A3P48751 1232 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 DIXDC1Q155Q3 683 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 RSPH4AQ5TD94 716 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 RSPH6AQ9H0K4 717 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 GTF3C3Q9Y5Q9 886 aa7.08□□□□□ -1.28
HMGB1-201ENST00000326004 DDX11L8A8MPP1 907 aa7.07□□□□□ -1.28
HMGB1-201ENST00000326004 HRO43593 1189 aa7.07□□□□□ -1.28
HMGB1-201ENST00000326004 MRPL50Q8N5N7 158 aaKnown RBP7.07□□□□□ -1.28
HMGB1-201ENST00000326004 SH3D19Q5HYK7 790 aa7.06□□□□□ -1.28
HMGB1-201ENST00000326004 SWT1Q5T5J6 900 aaKnown RBP7.06□□□□□ -1.28
HMGB1-201ENST00000326004 STAC3Q96MF2 364 aa7.06□□□□□ -1.28
HMGB1-201ENST00000326004 POTEMA6NI47 508 aa7.05□□□□□ -1.28
HMGB1-201ENST00000326004 ANKRD13DQ6ZTN6 518 aa7.05□□□□□ -1.28
HMGB1-201ENST00000326004 SLF2Q8IX21 1173 aa7.05□□□□□ -1.28
HMGB1-201ENST00000326004 ZFRQ96KR1 1074 aaKnown RBP7.05□□□□□ -1.28
HMGB1-201ENST00000326004 POTEGQ6S5H5 508 aa7.04□□□□□ -1.28
HMGB1-201ENST00000326004 RDH13Q8NBN7 331 aa7.04□□□□□ -1.28
HMGB1-201ENST00000326004 NECTIN2Q92692 538 aa7.04□□□□□ -1.28
HMGB1-201ENST00000326004 PCDH10Q9P2E7 1040 aa7.04□□□□□ -1.28
HMGB1-201ENST00000326004 SKIV2LQ15477 1246 aaKnown RBP7.03□□□□□ -1.28
HMGB1-201ENST00000326004 SAMD7Q7Z3H4 446 aa7.03□□□□□ -1.28
HMGB1-201ENST00000326004 PCMTD1Q96MG8 357 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-201ENST00000326004 KRTAP3-3Q9BYR6 98 aa7.03□□□□□ -1.28
HMGB1-201ENST00000326004 KRTAP3-2Q9BYR7 98 aa7.03□□□□□ -1.28
HMGB1-201ENST00000326004 GOLGA8CPA6NN73 597 aa7.02□□□□□ -1.29
HMGB1-201ENST00000326004 ERICH6Q7L0X2 663 aa7.02□□□□□ -1.29
HMGB1-201ENST00000326004 NUTM1Q86Y26 1132 aa7.02□□□□□ -1.29
HMGB1-201ENST00000326004 TBC1D2Q9BYX2 928 aa7.02□□□□□ -1.29
HMGB1-201ENST00000326004 SLC10A3P09131 477 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 GCGRP47871 477 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 USP46P62068 366 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 MYSM1Q5VVJ2 828 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 ANKK1Q8NFD2 765 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 SPIRE2Q8WWL2 714 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 LRCH3Q96II8 777 aa7.01□□□□□ -1.29
HMGB1-201ENST00000326004 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-201ENST00000326004 KDM4AO75164 1064 aa7□□□□□ -1.29
HMGB1-201ENST00000326004 CLK2P49760 499 aaKnown RBP7□□□□□ -1.29
HMGB1-201ENST00000326004 RNF40O75150 1001 aa6.99□□□□□ -1.29
HMGB1-201ENST00000326004 GJA5P36382 358 aa6.99□□□□□ -1.29
HMGB1-201ENST00000326004 TUSC1Q2TAM9 212 aa6.98□□□□□ -1.29
HMGB1-201ENST00000326004 KMT5BQ4FZB7 885 aa6.98□□□□□ -1.29
HMGB1-201ENST00000326004 CDAN1Q8IWY9 1227 aa6.98□□□□□ -1.29
HMGB1-201ENST00000326004 SOWAHBA6NEL2 793 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 CFHP08603 1231 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 GRIPAP1Q4V328 841 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 RIC3Q7Z5B4 369 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 WNT2BQ93097 391 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 PRR14Q9BWN1 585 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 POLR3EQ9NVU0 708 aa6.97□□□□□ -1.29
HMGB1-201ENST00000326004 SPTLC1O15269 473 aa6.96□□□□□ -1.3
HMGB1-201ENST00000326004 HOXA2O43364 376 aa6.96□□□□□ -1.3
HMGB1-201ENST00000326004 RSBN1LQ6PCB5 846 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-201ENST00000326004 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.96□□□□□ -1.3
HMGB1-201ENST00000326004 ATP1B4Q9UN42 357 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-201ENST00000326004 MOXD2PA6NHM9 499 aa6.95□□□□□ -1.3
HMGB1-201ENST00000326004 PPP4CP60510 307 aa6.95□□□□□ -1.3
HMGB1-201ENST00000326004 LIMD1Q9UGP4 676 aa6.95□□□□□ -1.3
HMGB1-201ENST00000326004 TSR3Q9UJK0 312 aaKnown RBP6.95□□□□□ -1.3
HMGB1-201ENST00000326004 PROCA1Q8NCQ7 364 aaPredicted RBP6.94□□□□□ -1.3
HMGB1-201ENST00000326004 HPS5Q9UPZ3 1129 aa6.94□□□□□ -1.3
HMGB1-201ENST00000326004 ACTN4O43707 911 aaKnown RBP6.93□□□□□ -1.3
HMGB1-201ENST00000326004 NDUFV2P19404 249 aa6.93□□□□□ -1.3
HMGB1-201ENST00000326004 ATP6V1AP38606 617 aa6.93□□□□□ -1.3
HMGB1-201ENST00000326004 BCAMP50895 628 aa6.93□□□□□ -1.3
HMGB1-201ENST00000326004 FUT2Q10981 343 aa6.93□□□□□ -1.3
HMGB1-201ENST00000326004 FDX1P10109 184 aa6.92□□□□□ -1.3
HMGB1-201ENST00000326004 PRPF38BQ5VTL8 546 aaKnown RBP6.92□□□□□ -1.3
HMGB1-201ENST00000326004 PPP2R2DQ66LE6 453 aa6.92□□□□□ -1.3
HMGB1-201ENST00000326004 THSD4Q6ZMP0 1018 aa6.92□□□□□ -1.3
HMGB1-201ENST00000326004 FLIIQ13045 1269 aa6.91□□□□□ -1.3
HMGB1-201ENST00000326004 LILRB3O75022 631 aa6.9□□□□□ -1.3
HMGB1-201ENST00000326004 NYAP1Q6ZVC0 841 aa6.9□□□□□ -1.3
HMGB1-201ENST00000326004 KCTD12Q96CX2 325 aaKnown RBP6.9□□□□□ -1.3
HMGB1-201ENST00000326004 ZBTB3Q9H5J0 574 aa6.9□□□□□ -1.3
HMGB1-201ENST00000326004 RFC5P40937 340 aa6.89□□□□□ -1.31
HMGB1-201ENST00000326004 TMEM259Q4ZIN3 620 aa6.89□□□□□ -1.31
HMGB1-201ENST00000326004 C14orf37Q86TY3 774 aa6.89□□□□□ -1.31
HMGB1-201ENST00000326004 TIMELESSQ9UNS1 1208 aa6.89□□□□□ -1.31
HMGB1-201ENST00000326004 PCDHB15Q9Y5E8 787 aa6.89□□□□□ -1.31
HMGB1-201ENST00000326004 SPDYE5A6NIY4 337 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 NUTM2BA6NNL0 878 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-201ENST00000326004 NUTM2EB1AL46 878 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-201ENST00000326004 APLP1P51693 650 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 GUCA2AQ02747 115 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 CSPP1Q1MSJ5 1256 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 Q3C1V9 767 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 MORN1Q5T089 497 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 NUTM2DQ5VT03 806 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-201ENST00000326004 NUTM2AQ8IVF1 878 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-201ENST00000326004 PLSCR2Q9NRY7 297 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 WBP1LQ9NX94 342 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 PCDHGC3Q9UN70 934 aa6.88□□□□□ -1.31
HMGB1-201ENST00000326004 HRCP23327 699 aa6.87□□□□□ -1.31
HMGB1-201ENST00000326004 MTMR2Q13614 643 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms