RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SENP3Q9H4L4 574 aaPredicted RBP14.15□□□□□ -0.14
HMGB3-201ENST00000325307 ADGRF5Q8IZF2 1346 aa14.15□□□□□ -0.14
HMGB3-201ENST00000325307 EIF4G2P78344 907 aaKnown RBP eCLIP14.14□□□□□ -0.15
HMGB3-201ENST00000325307 VGFO15240 615 aaPredicted RBP14.13□□□□□ -0.15
HMGB3-201ENST00000325307 ADAMTSL3P82987 1691 aa14.13□□□□□ -0.15
HMGB3-201ENST00000325307 RALGAPBQ86X10 1494 aa14.13□□□□□ -0.15
HMGB3-201ENST00000325307 NBPF1Q3BBV0 1214 aa14.12□□□□□ -0.15
HMGB3-201ENST00000325307 TMEM131LA2VDJ0 1609 aa14.12□□□□□ -0.15
HMGB3-201ENST00000325307 HSPA5P11021 654 aaKnown RBP14.12□□□□□ -0.15
HMGB3-201ENST00000325307 MYOM2P54296 1465 aa14.11□□□□□ -0.15
HMGB3-201ENST00000325307 A2ML1A8K2U0 1454 aa14.11□□□□□ -0.15
HMGB3-201ENST00000325307 NLRP1Q9C000 1473 aa14.1□□□□□ -0.15
HMGB3-201ENST00000325307 MYO5BQ9ULV0 1848 aa14.1□□□□□ -0.15
HMGB3-201ENST00000325307 CFAP70Q5T0N1 1121 aa14.1□□□□□ -0.15
HMGB3-201ENST00000325307 USP47Q96K76 1375 aa14.09□□□□□ -0.15
HMGB3-201ENST00000325307 NEXMIFQ5QGS0 1516 aa14.08□□□□□ -0.16
HMGB3-201ENST00000325307 PPLO60437 1756 aa14.08□□□□□ -0.16
HMGB3-201ENST00000325307 RIMS2Q9UQ26 1411 aa14.08□□□□□ -0.16
HMGB3-201ENST00000325307 TRPM1Q7Z4N2 1603 aa14.08□□□□□ -0.16
HMGB3-201ENST00000325307 HDGFP51858 240 aaKnown RBP14.08□□□□□ -0.16
HMGB3-201ENST00000325307 BCANQ96GW7 911 aa14.07□□□□□ -0.16
HMGB3-201ENST00000325307 IFT172Q9UG01 1749 aa14.07□□□□□ -0.16
HMGB3-201ENST00000325307 PTPRMP28827 1452 aa14.07□□□□□ -0.16
HMGB3-201ENST00000325307 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.07□□□□□ -0.16
HMGB3-201ENST00000325307 BCL11AQ9H165 835 aa14.06□□□□□ -0.16
HMGB3-201ENST00000325307 THEMISQ8N1K5 641 aaPredicted RBP14.06□□□□□ -0.16
HMGB3-201ENST00000325307 PIK3C2GO75747 1445 aa14.05□□□□□ -0.16
HMGB3-201ENST00000325307 NRXN1Q9ULB1 1477 aa14.05□□□□□ -0.16
HMGB3-201ENST00000325307 TMEM2Q9UHN6 1383 aa14.05□□□□□ -0.16
HMGB3-201ENST00000325307 C14orf93Q9H972 538 aaKnown RBP14.04□□□□□ -0.16
HMGB3-201ENST00000325307 GPRASP1Q5JY77 1395 aa14.04□□□□□ -0.16
HMGB3-201ENST00000325307 EID1Q9Y6B2 187 aa14.04□□□□□ -0.16
HMGB3-201ENST00000325307 ZFYVE9O95405 1425 aa14.04□□□□□ -0.16
HMGB3-201ENST00000325307 UBR1Q8IWV7 1749 aa14.03□□□□□ -0.16
HMGB3-201ENST00000325307 MYO3AQ8NEV4 1616 aa14.03□□□□□ -0.16
HMGB3-201ENST00000325307 ST20-MTHFSA0A0A6YYL1 179 aa14.03□□□□□ -0.16
HMGB3-201ENST00000325307 TMEM132EQ6IEE7 984 aa14.03□□□□□ -0.16
HMGB3-201ENST00000325307 TXNDC2Q86VQ3 553 aa14.03□□□□□ -0.16
HMGB3-201ENST00000325307 KDM4FA0A1W2PPD8 638 aa14.01□□□□□ -0.17
HMGB3-201ENST00000325307 POLR3GLQ9BT43 218 aa14.01□□□□□ -0.17
HMGB3-201ENST00000325307 CEP170BQ9Y4F5 1589 aaPredicted RBP14.01□□□□□ -0.17
HMGB3-201ENST00000325307 KDM5AP29375 1690 aaKnown RBP14□□□□□ -0.17
HMGB3-201ENST00000325307 LTKP29376 864 aa13.99□□□□□ -0.17
HMGB3-201ENST00000325307 TRAK1Q9UPV9 953 aa13.99□□□□□ -0.17
HMGB3-201ENST00000325307 SETD1BQ9UPS6 1966 aaKnown RBP13.99□□□□□ -0.17
HMGB3-201ENST00000325307 KIAA1210Q9ULL0 1709 aa13.99□□□□□ -0.17
HMGB3-201ENST00000325307 STK26Q9P289 416 aa13.99□□□□□ -0.17
HMGB3-201ENST00000325307 SCAF11Q99590 1463 aaKnown RBP13.99□□□□□ -0.17
HMGB3-201ENST00000325307 EIF3AQ14152 1382 aaKnown RBP13.98□□□□□ -0.17
HMGB3-201ENST00000325307 LAMC1P11047 1609 aa13.97□□□□□ -0.17
HMGB3-201ENST00000325307 DDX10Q13206 875 aaKnown RBP13.97□□□□□ -0.17
HMGB3-201ENST00000325307 MIER1Q8N108 512 aa13.96□□□□□ -0.17
HMGB3-201ENST00000325307 ANKLE2Q86XL3 938 aa13.96□□□□□ -0.18
HMGB3-201ENST00000325307 C11orf95C9JLR9 678 aaPredicted RBP13.95□□□□□ -0.18
HMGB3-201ENST00000325307 SLIT1O75093 1534 aa13.95□□□□□ -0.18
HMGB3-201ENST00000325307 SETBP1Q9Y6X0 1596 aa13.95□□□□□ -0.18
HMGB3-201ENST00000325307 WASHC2AQ641Q2 1341 aa13.95□□□□□ -0.18
HMGB3-201ENST00000325307 ALKQ9UM73 1620 aa13.95□□□□□ -0.18
HMGB3-201ENST00000325307 SLC26A8Q96RN1 970 aa13.94□□□□□ -0.18
HMGB3-201ENST00000325307 ARHGAP23Q9P227 1491 aa13.94□□□□□ -0.18
HMGB3-201ENST00000325307 PLEKHG1Q9ULL1 1385 aa13.94□□□□□ -0.18
HMGB3-201ENST00000325307 ADGRB1O14514 1584 aa13.94□□□□□ -0.18
HMGB3-201ENST00000325307 KIF7Q2M1P5 1343 aa13.93□□□□□ -0.18
HMGB3-201ENST00000325307 IQGAP1P46940 1657 aa13.93□□□□□ -0.18
HMGB3-201ENST00000325307 ZNF142P52746 1687 aaPredicted RBP13.93□□□□□ -0.18
HMGB3-201ENST00000325307 CCDC7Q96M83 1385 aa13.93□□□□□ -0.18
HMGB3-201ENST00000325307 TMF1P82094 1093 aa13.92□□□□□ -0.18
HMGB3-201ENST00000325307 SAFB2Q14151 953 aaKnown RBP eCLIP13.92□□□□□ -0.18
HMGB3-201ENST00000325307 CENPJQ9HC77 1338 aaPredicted RBP13.92□□□□□ -0.18
HMGB3-201ENST00000325307 TESK2Q96S53 571 aa13.92□□□□□ -0.18
HMGB3-201ENST00000325307 YTHDC2Q9H6S0 1430 aaKnown RBP13.91□□□□□ -0.18
HMGB3-201ENST00000325307 POGKQ9P215 609 aa13.91□□□□□ -0.18
HMGB3-201ENST00000325307 METP08581 1390 aa13.91□□□□□ -0.18
HMGB3-201ENST00000325307 ASXL1Q8IXJ9 1541 aa13.9□□□□□ -0.18
HMGB3-201ENST00000325307 NRXN3Q9Y4C0 1643 aa13.89□□□□□ -0.19
HMGB3-201ENST00000325307 PRAM1Q96QH2 718 aa13.89□□□□□ -0.19
HMGB3-201ENST00000325307 ADAMTS13Q76LX8 1427 aa13.89□□□□□ -0.19
HMGB3-201ENST00000325307 HSPA2P54652 639 aa13.88□□□□□ -0.19
HMGB3-201ENST00000325307 LRPPRCP42704 1394 aaKnown RBP13.88□□□□□ -0.19
HMGB3-201ENST00000325307 DISP3Q9P2K9 1392 aa13.88□□□□□ -0.19
HMGB3-201ENST00000325307 NCKAP5LQ9HCH0 1330 aa13.88□□□□□ -0.19
HMGB3-201ENST00000325307 TBX22Q9Y458 520 aa13.87□□□□□ -0.19
HMGB3-201ENST00000325307 CDCA8Q53HL2 280 aa13.87□□□□□ -0.19
HMGB3-201ENST00000325307 WAPLQ7Z5K2 1190 aa13.85□□□□□ -0.19
HMGB3-201ENST00000325307 MINK1Q8N4C8 1332 aaPredicted RBP13.85□□□□□ -0.19
HMGB3-201ENST00000325307 ABCC11Q96J66 1382 aa13.85□□□□□ -0.19
HMGB3-201ENST00000325307 NPHP4O75161 1426 aaPredicted RBP13.84□□□□□ -0.19
HMGB3-201ENST00000325307 SETD1AO15047 1707 aaKnown RBP13.84□□□□□ -0.19
HMGB3-201ENST00000325307 AMOTL2Q9Y2J4 779 aa13.84□□□□□ -0.19
HMGB3-201ENST00000325307 ARHGEF28Q8N1W1 1705 aaKnown RBP13.83□□□□□ -0.19
HMGB3-201ENST00000325307 MED14O60244 1454 aa13.83□□□□□ -0.2
HMGB3-201ENST00000325307 EVC2Q86UK5 1308 aa13.82□□□□□ -0.2
HMGB3-201ENST00000325307 QRICH2Q9H0J4 1663 aa13.82□□□□□ -0.2
HMGB3-201ENST00000325307 SBNO2Q9Y2G9 1366 aa13.82□□□□□ -0.2
HMGB3-201ENST00000325307 POLR1AO95602 1720 aaPredicted RBP13.82□□□□□ -0.2
HMGB3-201ENST00000325307 DIP2AQ14689 1571 aa13.81□□□□□ -0.2
HMGB3-201ENST00000325307 PLEKHH1Q9ULM0 1364 aa13.81□□□□□ -0.2
HMGB3-201ENST00000325307 SRPK2P78362 688 aaKnown RBP13.81□□□□□ -0.2
HMGB3-201ENST00000325307 PTPRUQ92729 1446 aa13.8□□□□□ -0.2
HMGB3-201ENST00000325307 DLC1Q96QB1 1528 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms