RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 ADGRL1O94910 1474 aa22.98■■□□□ 1.27
COL9A1-201ENST00000320755 UGGT1Q9NYU2 1555 aa22.97■■□□□ 1.27
COL9A1-201ENST00000320755 PTPRTO14522 1441 aa22.97■■□□□ 1.27
COL9A1-201ENST00000320755 ATP7AQ04656 1500 aa22.96■■□□□ 1.27
COL9A1-201ENST00000320755 RNF17Q9BXT8 1623 aaKnown RBP22.96■■□□□ 1.27
COL9A1-201ENST00000320755 GGT6Q6P531 493 aa22.95■■□□□ 1.27
COL9A1-201ENST00000320755 PLEKHH1Q9ULM0 1364 aa22.95■■□□□ 1.26
COL9A1-201ENST00000320755 SENP3Q9H4L4 574 aaPredicted RBP22.95■■□□□ 1.26
COL9A1-201ENST00000320755 STAC3Q96MF2 364 aa22.94■■□□□ 1.26
COL9A1-201ENST00000320755 SPHKAPQ2M3C7 1700 aa22.94■■□□□ 1.26
COL9A1-201ENST00000320755 EIF3AQ14152 1382 aaKnown RBP22.93■■□□□ 1.26
COL9A1-201ENST00000320755 IPO9Q96P70 1041 aaKnown RBP22.93■■□□□ 1.26
COL9A1-201ENST00000320755 TNNT2P45379 298 aaPredicted RBP22.92■■□□□ 1.26
COL9A1-201ENST00000320755 ZBTB47Q9UFB7 747 aaPredicted RBP22.92■■□□□ 1.26
COL9A1-201ENST00000320755 GOLGA2Q08379 1002 aa22.91■■□□□ 1.26
COL9A1-201ENST00000320755 APAF1O14727 1248 aa22.91■■□□□ 1.26
COL9A1-201ENST00000320755 TRAK1Q9UPV9 953 aa22.91■■□□□ 1.26
COL9A1-201ENST00000320755 TCERG1O14776 1098 aaKnown RBP22.9■■□□□ 1.26
COL9A1-201ENST00000320755 PDE4AP27815 886 aa22.9■■□□□ 1.26
COL9A1-201ENST00000320755 NPM1P06748 294 aaKnown RBP eCLIP22.9■■□□□ 1.26
COL9A1-201ENST00000320755 DUSP27Q5VZP5 1158 aa22.9■■□□□ 1.26
COL9A1-201ENST00000320755 IQGAP1P46940 1657 aa22.89■■□□□ 1.26
COL9A1-201ENST00000320755 ASXL2Q76L83 1435 aa22.89■■□□□ 1.26
COL9A1-201ENST00000320755 NUTM2DQ5VT03 806 aaPredicted RBP22.89■■□□□ 1.25
COL9A1-201ENST00000320755 CARD14Q9BXL6 1004 aa22.89■■□□□ 1.25
COL9A1-201ENST00000320755 CEP152O94986 1710 aa22.88■■□□□ 1.25
COL9A1-201ENST00000320755 ZMYM4Q5VZL5 1548 aa22.88■■□□□ 1.25
COL9A1-201ENST00000320755 TET3O43151 1660 aa22.87■■□□□ 1.25
COL9A1-201ENST00000320755 ASXL1Q8IXJ9 1541 aa22.87■■□□□ 1.25
COL9A1-201ENST00000320755 TMEM132EQ6IEE7 984 aa22.87■■□□□ 1.25
COL9A1-201ENST00000320755 CFAP65Q6ZU64 1925 aaKnown RBP22.87■■□□□ 1.25
COL9A1-201ENST00000320755 ARAP3Q8WWN8 1544 aa22.86■■□□□ 1.25
COL9A1-201ENST00000320755 SPINK5Q9NQ38 1064 aaPredicted RBP22.85■■□□□ 1.25
COL9A1-201ENST00000320755 INSRP06213 1382 aa22.84■■□□□ 1.25
COL9A1-201ENST00000320755 DEPDC5O75140 1603 aa22.83■■□□□ 1.24
COL9A1-201ENST00000320755 INO80Q9ULG1 1556 aaPredicted RBP22.82■■□□□ 1.24
COL9A1-201ENST00000320755 SYNMO15061 1565 aa22.82■■□□□ 1.24
COL9A1-201ENST00000320755 NEUROD2Q15784 382 aa22.82■■□□□ 1.24
COL9A1-201ENST00000320755 BACH2Q9BYV9 841 aa22.81■■□□□ 1.24
COL9A1-201ENST00000320755 NOS1P29475 1434 aa22.81■■□□□ 1.24
COL9A1-201ENST00000320755 SLC12A5Q9H2X9 1139 aa22.81■■□□□ 1.24
COL9A1-201ENST00000320755 ABCA9Q8IUA7 1624 aa22.81■■□□□ 1.24
COL9A1-201ENST00000320755 SLFN5Q08AF3 891 aa22.8■■□□□ 1.24
COL9A1-201ENST00000320755 CENPJQ9HC77 1338 aaPredicted RBP22.8■■□□□ 1.24
COL9A1-201ENST00000320755 ERVK-7P63135 1459 aa22.8■■□□□ 1.24
COL9A1-201ENST00000320755 ZNF521Q96K83 1311 aa22.79■■□□□ 1.24
COL9A1-201ENST00000320755 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
COL9A1-201ENST00000320755 PIK3C2GO75747 1445 aa22.78■■□□□ 1.24
COL9A1-201ENST00000320755 VWDEQ8N2E2 1590 aa22.78■■□□□ 1.24
COL9A1-201ENST00000320755 BCAR3O75815 825 aa22.77■■□□□ 1.24
COL9A1-201ENST00000320755 MORC1Q86VD1 984 aa22.76■■□□□ 1.23
COL9A1-201ENST00000320755 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.76■■□□□ 1.23
COL9A1-201ENST00000320755 MROH1Q8NDA8 1641 aa22.76■■□□□ 1.23
COL9A1-201ENST00000320755 RAPGEF3O95398 923 aa22.76■■□□□ 1.23
COL9A1-201ENST00000320755 MS4A1P11836 297 aa22.76■■□□□ 1.23
COL9A1-201ENST00000320755 SAFB2Q14151 953 aaKnown RBP eCLIP22.76■■□□□ 1.23
COL9A1-201ENST00000320755 BCL11AQ9H165 835 aa22.76■■□□□ 1.23
COL9A1-201ENST00000320755 ABCA6Q8N139 1617 aa22.75■■□□□ 1.23
COL9A1-201ENST00000320755 SLC24A1O60721 1099 aa22.75■■□□□ 1.23
COL9A1-201ENST00000320755 RRP7AQ9Y3A4 280 aaKnown RBP22.75■■□□□ 1.23
COL9A1-201ENST00000320755 MAP3K4Q9Y6R4 1608 aa22.75■■□□□ 1.23
COL9A1-201ENST00000320755 KDM5AP29375 1690 aaKnown RBP22.75■■□□□ 1.23
COL9A1-201ENST00000320755 MYOM1P52179 1685 aa22.74■■□□□ 1.23
COL9A1-201ENST00000320755 DEKP35659 375 aaKnown RBP22.73■■□□□ 1.23
COL9A1-201ENST00000320755 NPC1L1Q9UHC9 1359 aa22.73■■□□□ 1.23
COL9A1-201ENST00000320755 KIF1BO60333 1816 aa22.73■■□□□ 1.23
COL9A1-201ENST00000320755 EFCAB6Q5THR3 1501 aa22.72■■□□□ 1.23
COL9A1-201ENST00000320755 CD109Q6YHK3 1445 aa22.72■■□□□ 1.23
COL9A1-201ENST00000320755 KIDINS220Q9ULH0 1771 aa22.72■■□□□ 1.23
COL9A1-201ENST00000320755 LAS1LQ9Y4W2 734 aaKnown RBP22.72■■□□□ 1.23
COL9A1-201ENST00000320755 ZNF518AQ6AHZ1 1483 aa22.71■■□□□ 1.23
COL9A1-201ENST00000320755 RGS3P49796 1198 aa22.71■■□□□ 1.23
COL9A1-201ENST00000320755 PPRC1Q5VV67 1664 aaKnown RBP22.71■■□□□ 1.23
COL9A1-201ENST00000320755 MYOM2P54296 1465 aa22.71■■□□□ 1.23
COL9A1-201ENST00000320755 C14orf93Q9H972 538 aaKnown RBP22.7■■□□□ 1.22
COL9A1-201ENST00000320755 NSD3Q9BZ95 1437 aa22.69■■□□□ 1.22
COL9A1-201ENST00000320755 OSCARQ8IYS5 282 aa22.69■■□□□ 1.22
COL9A1-201ENST00000320755 NPATQ14207 1427 aa22.69■■□□□ 1.22
COL9A1-201ENST00000320755 MROH2AA6NES4 1674 aa22.68■■□□□ 1.22
COL9A1-201ENST00000320755 E9PSI1 815 aa22.68■■□□□ 1.22
COL9A1-201ENST00000320755 RTL5Q5HYW3 569 aaPredicted RBP22.68■■□□□ 1.22
COL9A1-201ENST00000320755 CANXP27824 592 aaKnown RBP22.67■■□□□ 1.22
COL9A1-201ENST00000320755 CENPQQ7L2Z9 268 aaPredicted RBP22.67■■□□□ 1.22
COL9A1-201ENST00000320755 STK26Q9P289 416 aa22.67■■□□□ 1.22
COL9A1-201ENST00000320755 KDM2BQ8NHM5 1336 aa22.67■■□□□ 1.22
COL9A1-201ENST00000320755 TRMT2AQ8IZ69 625 aaKnown RBP22.66■■□□□ 1.22
COL9A1-201ENST00000320755 KIAA1210Q9ULL0 1709 aa22.66■■□□□ 1.22
COL9A1-201ENST00000320755 WWC1Q8IX03 1113 aa22.65■■□□□ 1.22
COL9A1-201ENST00000320755 FRAT1Q92837 279 aaPredicted RBP22.65■■□□□ 1.22
COL9A1-201ENST00000320755 MTHFSP49914 203 aa22.64■■□□□ 1.22
COL9A1-201ENST00000320755 CABP2Q9NPB3 220 aa22.63■■□□□ 1.21
COL9A1-201ENST00000320755 NKTRP30414 1462 aaKnown RBP22.63■■□□□ 1.21
COL9A1-201ENST00000320755 SLC4A3P48751 1232 aa22.61■■□□□ 1.21
COL9A1-201ENST00000320755 TCP11L2Q8N4U5 519 aa22.61■■□□□ 1.21
COL9A1-201ENST00000320755 PANK1Q8TE04 598 aa22.61■■□□□ 1.21
COL9A1-201ENST00000320755 POGZQ7Z3K3 1410 aa22.6■■□□□ 1.21
COL9A1-201ENST00000320755 COG6Q9Y2V7 657 aa22.6■■□□□ 1.21
COL9A1-201ENST00000320755 BCL2L13Q9BXK5 485 aa22.59■■□□□ 1.21
COL9A1-201ENST00000320755 NRXN1Q9ULB1 1477 aa22.58■■□□□ 1.21
COL9A1-201ENST00000320755 POLR3AO14802 1390 aaPredicted RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms