RNA–Protein interactions for RNA: ENST00000296273.6

RFC4-201, Transcript of replication factor C subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC4, Length 1,384 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-201ENST00000296273 ROBO1Q9Y6N7 1651 aa16.38■□□□□ 0.21
RFC4-201ENST00000296273 MSH6P52701 1360 aa16.38■□□□□ 0.21
RFC4-201ENST00000296273 BCANQ96GW7 911 aa16.37■□□□□ 0.21
RFC4-201ENST00000296273 ANKRD50Q9ULJ7 1429 aa16.35■□□□□ 0.21
RFC4-201ENST00000296273 PLEKHG1Q9ULL1 1385 aa16.35■□□□□ 0.21
RFC4-201ENST00000296273 ZFYVE9O95405 1425 aa16.34■□□□□ 0.21
RFC4-201ENST00000296273 RBM33Q96EV2 1170 aaKnown RBP16.33■□□□□ 0.2
RFC4-201ENST00000296273 NCOA3Q9Y6Q9 1424 aa16.33■□□□□ 0.2
RFC4-201ENST00000296273 PPP1R15AO75807 674 aaPredicted RBP16.32■□□□□ 0.2
RFC4-201ENST00000296273 SLAIN2Q9P270 581 aa16.32■□□□□ 0.2
RFC4-201ENST00000296273 RIMS2Q9UQ26 1411 aa16.31■□□□□ 0.2
RFC4-201ENST00000296273 FAM50AQ14320 339 aaKnown RBP16.31■□□□□ 0.2
RFC4-201ENST00000296273 POTEAQ6S8J7 498 aa16.31■□□□□ 0.2
RFC4-201ENST00000296273 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.31■□□□□ 0.2
RFC4-201ENST00000296273 JCADQ9P266 1359 aa16.3■□□□□ 0.2
RFC4-201ENST00000296273 TBX22Q9Y458 520 aa16.3■□□□□ 0.2
RFC4-201ENST00000296273 CHD2O14647 1828 aaKnown RBP16.3■□□□□ 0.2
RFC4-201ENST00000296273 FOXD1Q16676 465 aa16.29■□□□□ 0.2
RFC4-201ENST00000296273 TMEM131LA2VDJ0 1609 aa16.29■□□□□ 0.2
RFC4-201ENST00000296273 PHLPP1O60346 1717 aa16.28■□□□□ 0.2
RFC4-201ENST00000296273 GCC2Q8IWJ2 1684 aa16.28■□□□□ 0.2
RFC4-201ENST00000296273 PIK3R4Q99570 1358 aa16.27■□□□□ 0.19
RFC4-201ENST00000296273 UNC13BO14795 1591 aa16.26■□□□□ 0.19
RFC4-201ENST00000296273 DIP2AQ14689 1571 aa16.26■□□□□ 0.19
RFC4-201ENST00000296273 MYO5BQ9ULV0 1848 aa16.25■□□□□ 0.19
RFC4-201ENST00000296273 CADPS2Q86UW7 1296 aa16.25■□□□□ 0.19
RFC4-201ENST00000296273 SPATA31A6Q5VVP1 1343 aa16.24■□□□□ 0.19
RFC4-201ENST00000296273 COL16A1Q07092 1604 aaPredicted RBP16.24■□□□□ 0.19
RFC4-201ENST00000296273 CHGAP10645 457 aaKnown RBP16.24■□□□□ 0.19
RFC4-201ENST00000296273 C14orf37Q86TY3 774 aa16.24■□□□□ 0.19
RFC4-201ENST00000296273 ADAMTS13Q76LX8 1427 aa16.23■□□□□ 0.19
RFC4-201ENST00000296273 C19orf44Q9H6X5 657 aa16.23■□□□□ 0.19
RFC4-201ENST00000296273 ROCK1Q13464 1354 aa16.22■□□□□ 0.19
RFC4-201ENST00000296273 E9PCH4 1651 aa16.21■□□□□ 0.19
RFC4-201ENST00000296273 ATF3P18847 181 aa16.21■□□□□ 0.19
RFC4-201ENST00000296273 AHDC1Q5TGY3 1603 aaPredicted RBP16.2■□□□□ 0.18
RFC4-201ENST00000296273 IQGAP3Q86VI3 1631 aa16.2■□□□□ 0.18
RFC4-201ENST00000296273 TRPM2O94759 1503 aa16.2■□□□□ 0.18
RFC4-201ENST00000296273 ZNF772Q68DY9 489 aaPredicted RBP16.19■□□□□ 0.18
RFC4-201ENST00000296273 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.19■□□□□ 0.18
RFC4-201ENST00000296273 MEX3CQ5U5Q3 659 aaKnown RBP16.17■□□□□ 0.18
RFC4-201ENST00000296273 DCCP43146 1447 aa16.17■□□□□ 0.18
RFC4-201ENST00000296273 SHPRHQ149N8 1683 aa16.16■□□□□ 0.18
RFC4-201ENST00000296273 NUTM2DQ5VT03 806 aaPredicted RBP16.16■□□□□ 0.18
RFC4-201ENST00000296273 AMOTL2Q9Y2J4 779 aa16.16■□□□□ 0.18
RFC4-201ENST00000296273 LRP6O75581 1613 aa16.16■□□□□ 0.18
RFC4-201ENST00000296273 NUP155O75694 1391 aa16.16■□□□□ 0.18
RFC4-201ENST00000296273 SETD1AO15047 1707 aaKnown RBP16.15■□□□□ 0.18
RFC4-201ENST00000296273 PTPRUQ92729 1446 aa16.13■□□□□ 0.17
RFC4-201ENST00000296273 BRINP3Q76B58 766 aa16.13■□□□□ 0.17
RFC4-201ENST00000296273 SETBP1Q9Y6X0 1596 aa16.12■□□□□ 0.17
RFC4-201ENST00000296273 XRN1Q8IZH2 1706 aaKnown RBP16.1■□□□□ 0.17
RFC4-201ENST00000296273 SETD5Q9C0A6 1442 aa16.1■□□□□ 0.17
RFC4-201ENST00000296273 RXRBP28702 533 aa16.09■□□□□ 0.17
RFC4-201ENST00000296273 UPF1Q92900 1129 aaKnown RBP eCLIP16.09■□□□□ 0.17
RFC4-201ENST00000296273 CDK12Q9NYV4 1490 aaPredicted RBP16.09■□□□□ 0.17
RFC4-201ENST00000296273 ASXL1Q8IXJ9 1541 aa16.09■□□□□ 0.17
RFC4-201ENST00000296273 NRXN3Q9Y4C0 1643 aa16.09■□□□□ 0.17
RFC4-201ENST00000296273 MST1RQ04912 1400 aa16.08■□□□□ 0.16
RFC4-201ENST00000296273 ZNF326Q5BKZ1 582 aaKnown RBP16.08■□□□□ 0.16
RFC4-201ENST00000296273 TRIM52Q96A61 297 aa16.08■□□□□ 0.16
RFC4-201ENST00000296273 LRRC59Q96AG4 307 aaKnown RBP16.08■□□□□ 0.16
RFC4-201ENST00000296273 SPHKAPQ2M3C7 1700 aa16.07■□□□□ 0.16
RFC4-201ENST00000296273 NHSL1Q5SYE7 1610 aa16.06■□□□□ 0.16
RFC4-201ENST00000296273 NUTM2BA6NNL0 878 aaPredicted RBP16.05■□□□□ 0.16
RFC4-201ENST00000296273 NUTM2EB1AL46 878 aaPredicted RBP16.05■□□□□ 0.16
RFC4-201ENST00000296273 ITGAEP38570 1179 aa16.05■□□□□ 0.16
RFC4-201ENST00000296273 NUTM2AQ8IVF1 878 aaPredicted RBP16.05■□□□□ 0.16
RFC4-201ENST00000296273 ADGRL3Q9HAR2 1447 aa16.05■□□□□ 0.16
RFC4-201ENST00000296273 METP08581 1390 aa16.04■□□□□ 0.16
RFC4-201ENST00000296273 AFF2P51816 1311 aa16.03■□□□□ 0.16
RFC4-201ENST00000296273 NEXMIFQ5QGS0 1516 aa16.01■□□□□ 0.15
RFC4-201ENST00000296273 PNPLA6Q8IY17 1366 aa16■□□□□ 0.15
RFC4-201ENST00000296273 RBM6P78332 1123 aaKnown RBP15.99■□□□□ 0.15
RFC4-201ENST00000296273 CLTCL1P53675 1640 aa15.98■□□□□ 0.15
RFC4-201ENST00000296273 NALCNQ8IZF0 1738 aa15.98■□□□□ 0.15
RFC4-201ENST00000296273 PTCH1Q13635 1447 aa15.98■□□□□ 0.15
RFC4-201ENST00000296273 VGFO15240 615 aaPredicted RBP15.98■□□□□ 0.15
RFC4-201ENST00000296273 C8orf37Q96NL8 207 aa15.98■□□□□ 0.15
RFC4-201ENST00000296273 QTRT2Q9H974 415 aaKnown RBP15.98■□□□□ 0.15
RFC4-201ENST00000296273 C1orf167Q5SNV9 1468 aa15.97■□□□□ 0.15
RFC4-201ENST00000296273 KIF1BO60333 1816 aa15.96■□□□□ 0.15
RFC4-201ENST00000296273 DDX17Q92841 729 aaKnown RBP15.96■□□□□ 0.15
RFC4-201ENST00000296273 LAMC1P11047 1609 aa15.96■□□□□ 0.14
RFC4-201ENST00000296273 NGLY1Q96IV0 654 aa15.95■□□□□ 0.14
RFC4-201ENST00000296273 PRAG1Q86YV5 1406 aa15.95■□□□□ 0.14
RFC4-201ENST00000296273 RGS12O14924 1447 aa15.94■□□□□ 0.14
RFC4-201ENST00000296273 SOS2Q07890 1332 aaPredicted RBP15.94■□□□□ 0.14
RFC4-201ENST00000296273 RPGRIP1LQ68CZ1 1315 aa15.94■□□□□ 0.14
RFC4-201ENST00000296273 HFM1A2PYH4 1435 aa15.92■□□□□ 0.14
RFC4-201ENST00000296273 NAIPQ13075 1403 aa15.92■□□□□ 0.14
RFC4-201ENST00000296273 RRBP1Q9P2E9 1410 aaKnown RBP15.91■□□□□ 0.14
RFC4-201ENST00000296273 ADAMTS2O95450 1211 aa15.91■□□□□ 0.14
RFC4-201ENST00000296273 ROBO2Q9HCK4 1378 aa15.91■□□□□ 0.14
RFC4-201ENST00000296273 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
RFC4-201ENST00000296273 ORAI2Q96SN7 254 aa15.89■□□□□ 0.13
RFC4-201ENST00000296273 USP21Q9UK80 565 aa15.89■□□□□ 0.13
RFC4-201ENST00000296273 TRPC5Q9UL62 973 aaPredicted RBP15.89■□□□□ 0.13
RFC4-201ENST00000296273 ATAD2Q6PL18 1390 aa15.88■□□□□ 0.13
RFC4-201ENST00000296273 FNBP4Q8N3X1 1017 aaPredicted RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms