RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 UNC13BO14795 1591 aa21.43■■□□□ 1.02
TPM1-202ENST00000288398 ALKQ9UM73 1620 aa21.43■■□□□ 1.02
TPM1-202ENST00000288398 GCC2Q8IWJ2 1684 aa21.43■■□□□ 1.02
TPM1-202ENST00000288398 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
TPM1-202ENST00000288398 TMEM94Q12767 1356 aa21.4■■□□□ 1.02
TPM1-202ENST00000288398 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.4■■□□□ 1.02
TPM1-202ENST00000288398 RIMS2Q9UQ26 1411 aa21.39■■□□□ 1.02
TPM1-202ENST00000288398 NUP155O75694 1391 aa21.39■■□□□ 1.02
TPM1-202ENST00000288398 PLEKHG1Q9ULL1 1385 aa21.37■■□□□ 1.01
TPM1-202ENST00000288398 NKTRP30414 1462 aaKnown RBP21.37■■□□□ 1.01
TPM1-202ENST00000288398 IQGAP3Q86VI3 1631 aa21.36■■□□□ 1.01
TPM1-202ENST00000288398 MSH6P52701 1360 aa21.35■■□□□ 1.01
TPM1-202ENST00000288398 ZFYVE9O95405 1425 aa21.34■■□□□ 1.01
TPM1-202ENST00000288398 E9PCH4 1651 aa21.34■■□□□ 1.01
TPM1-202ENST00000288398 XIRP1Q702N8 1843 aaKnown RBP21.34■■□□□ 1.01
TPM1-202ENST00000288398 TMEM131LA2VDJ0 1609 aa21.33■■□□□ 1.01
TPM1-202ENST00000288398 RBM33Q96EV2 1170 aaKnown RBP21.33■■□□□ 1.01
TPM1-202ENST00000288398 NWD1Q149M9 1564 aa21.31■■□□□ 1
TPM1-202ENST00000288398 FAM135BQ49AJ0 1406 aa21.31■■□□□ 1
TPM1-202ENST00000288398 C14orf37Q86TY3 774 aa21.31■■□□□ 1
TPM1-202ENST00000288398 MYO5BQ9ULV0 1848 aa21.31■■□□□ 1
TPM1-202ENST00000288398 NUTM2DQ5VT03 806 aaPredicted RBP21.3■■□□□ 1
TPM1-202ENST00000288398 TBX22Q9Y458 520 aa21.29■■□□□ 1
TPM1-202ENST00000288398 DIP2AQ14689 1571 aa21.25■□□□□ 0.99
TPM1-202ENST00000288398 ZNF326Q5BKZ1 582 aaKnown RBP21.25■□□□□ 0.99
TPM1-202ENST00000288398 ROBO1Q9Y6N7 1651 aa21.24■□□□□ 0.99
TPM1-202ENST00000288398 SLAIN2Q9P270 581 aa21.23■□□□□ 0.99
TPM1-202ENST00000288398 PIK3R4Q99570 1358 aa21.23■□□□□ 0.99
TPM1-202ENST00000288398 CHD2O14647 1828 aaKnown RBP21.22■□□□□ 0.99
TPM1-202ENST00000288398 NCOA3Q9Y6Q9 1424 aa21.21■□□□□ 0.99
TPM1-202ENST00000288398 TRPM2O94759 1503 aa21.2■□□□□ 0.98
TPM1-202ENST00000288398 ATF3P18847 181 aa21.2■□□□□ 0.98
TPM1-202ENST00000288398 ADAMTS13Q76LX8 1427 aa21.2■□□□□ 0.98
TPM1-202ENST00000288398 RRBP1Q9P2E9 1410 aaKnown RBP21.2■□□□□ 0.98
TPM1-202ENST00000288398 SPHKAPQ2M3C7 1700 aa21.19■□□□□ 0.98
TPM1-202ENST00000288398 CADPS2Q86UW7 1296 aa21.18■□□□□ 0.98
TPM1-202ENST00000288398 TRIM52Q96A61 297 aa21.17■□□□□ 0.98
TPM1-202ENST00000288398 C19orf44Q9H6X5 657 aa21.16■□□□□ 0.98
TPM1-202ENST00000288398 AMOTL2Q9Y2J4 779 aa21.16■□□□□ 0.98
TPM1-202ENST00000288398 NAIPQ13075 1403 aa21.13■□□□□ 0.97
TPM1-202ENST00000288398 PHLPP1O60346 1717 aa21.13■□□□□ 0.97
TPM1-202ENST00000288398 JCADQ9P266 1359 aa21.11■□□□□ 0.97
TPM1-202ENST00000288398 SETBP1Q9Y6X0 1596 aa21.09■□□□□ 0.97
TPM1-202ENST00000288398 HFM1A2PYH4 1435 aa21.08■□□□□ 0.97
TPM1-202ENST00000288398 SLC4A1APQ9BWU0 796 aaKnown RBP21.08■□□□□ 0.97
TPM1-202ENST00000288398 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.08■□□□□ 0.97
TPM1-202ENST00000288398 CLTCL1P53675 1640 aa21.07■□□□□ 0.96
TPM1-202ENST00000288398 PTPRUQ92729 1446 aa21.07■□□□□ 0.96
TPM1-202ENST00000288398 MEX3CQ5U5Q3 659 aaKnown RBP21.06■□□□□ 0.96
TPM1-202ENST00000288398 RGS17Q9UGC6 210 aaPredicted RBP21.06■□□□□ 0.96
TPM1-202ENST00000288398 KIF1BO60333 1816 aa21.06■□□□□ 0.96
TPM1-202ENST00000288398 DCCP43146 1447 aa21.04■□□□□ 0.96
TPM1-202ENST00000288398 VGFO15240 615 aaPredicted RBP21.04■□□□□ 0.96
TPM1-202ENST00000288398 NRXN3Q9Y4C0 1643 aa21.04■□□□□ 0.96
TPM1-202ENST00000288398 METP08581 1390 aa21.03■□□□□ 0.96
TPM1-202ENST00000288398 NEXMIFQ5QGS0 1516 aa21.03■□□□□ 0.96
TPM1-202ENST00000288398 SPATA31A6Q5VVP1 1343 aa21.03■□□□□ 0.96
TPM1-202ENST00000288398 XRN1Q8IZH2 1706 aaKnown RBP21.02■□□□□ 0.96
TPM1-202ENST00000288398 COL16A1Q07092 1604 aaPredicted RBP21.02■□□□□ 0.96
TPM1-202ENST00000288398 AHDC1Q5TGY3 1603 aaPredicted RBP21■□□□□ 0.95
TPM1-202ENST00000288398 BRINP3Q76B58 766 aa21■□□□□ 0.95
TPM1-202ENST00000288398 RPGRIP1LQ68CZ1 1315 aa21■□□□□ 0.95
TPM1-202ENST00000288398 POTEAQ6S8J7 498 aa20.99■□□□□ 0.95
TPM1-202ENST00000288398 ADGRL3Q9HAR2 1447 aa20.96■□□□□ 0.95
TPM1-202ENST00000288398 ASXL1Q8IXJ9 1541 aa20.95■□□□□ 0.94
TPM1-202ENST00000288398 MST1RQ04912 1400 aa20.95■□□□□ 0.94
TPM1-202ENST00000288398 ZNF772Q68DY9 489 aaPredicted RBP20.94■□□□□ 0.94
TPM1-202ENST00000288398 NUTM2BA6NNL0 878 aaPredicted RBP20.93■□□□□ 0.94
TPM1-202ENST00000288398 NUTM2EB1AL46 878 aaPredicted RBP20.93■□□□□ 0.94
TPM1-202ENST00000288398 NUTM2AQ8IVF1 878 aaPredicted RBP20.93■□□□□ 0.94
TPM1-202ENST00000288398 CCDC144AA2RUR9 1427 aa20.93■□□□□ 0.94
TPM1-202ENST00000288398 SHPRHQ149N8 1683 aa20.93■□□□□ 0.94
TPM1-202ENST00000288398 PTCH1Q13635 1447 aa20.91■□□□□ 0.94
TPM1-202ENST00000288398 LRRC59Q96AG4 307 aaKnown RBP20.91■□□□□ 0.94
TPM1-202ENST00000288398 FOXD1Q16676 465 aa20.9■□□□□ 0.94
TPM1-202ENST00000288398 LRP6O75581 1613 aa20.89■□□□□ 0.94
TPM1-202ENST00000288398 ACIN1Q9UKV3 1341 aaKnown RBP20.89■□□□□ 0.93
TPM1-202ENST00000288398 NALCNQ8IZF0 1738 aa20.88■□□□□ 0.93
TPM1-202ENST00000288398 SETD5Q9C0A6 1442 aa20.87■□□□□ 0.93
TPM1-202ENST00000288398 RGL3Q3MIN7 710 aa20.87■□□□□ 0.93
TPM1-202ENST00000288398 MPHOSPH9Q99550 1183 aa20.87■□□□□ 0.93
TPM1-202ENST00000288398 ROBO2Q9HCK4 1378 aa20.86■□□□□ 0.93
TPM1-202ENST00000288398 PPLO60437 1756 aa20.86■□□□□ 0.93
TPM1-202ENST00000288398 NHSL1Q5SYE7 1610 aa20.86■□□□□ 0.93
TPM1-202ENST00000288398 C1orf167Q5SNV9 1468 aa20.84■□□□□ 0.93
TPM1-202ENST00000288398 ANKRD30BQ9BXX2 1392 aa20.83■□□□□ 0.92
TPM1-202ENST00000288398 SETD1AO15047 1707 aaKnown RBP20.82■□□□□ 0.92
TPM1-202ENST00000288398 DDX17Q92841 729 aaKnown RBP20.82■□□□□ 0.92
TPM1-202ENST00000288398 PRAG1Q86YV5 1406 aa20.81■□□□□ 0.92
TPM1-202ENST00000288398 RXRBP28702 533 aa20.81■□□□□ 0.92
TPM1-202ENST00000288398 STK26Q9P289 416 aa20.81■□□□□ 0.92
TPM1-202ENST00000288398 AFF2P51816 1311 aa20.79■□□□□ 0.92
TPM1-202ENST00000288398 ADGRF5Q8IZF2 1346 aa20.79■□□□□ 0.92
TPM1-202ENST00000288398 C8orf37Q96NL8 207 aa20.79■□□□□ 0.92
TPM1-202ENST00000288398 PNPLA6Q8IY17 1366 aa20.79■□□□□ 0.92
TPM1-202ENST00000288398 ORAI2Q96SN7 254 aa20.78■□□□□ 0.92
TPM1-202ENST00000288398 SPATA31E1Q6ZUB1 1445 aa20.77■□□□□ 0.91
TPM1-202ENST00000288398 ESCO1Q5FWF5 840 aa20.76■□□□□ 0.91
TPM1-202ENST00000288398 ADAMTS2O95450 1211 aa20.75■□□□□ 0.91
TPM1-202ENST00000288398 LRPPRCP42704 1394 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms