RNA–Protein interactions for RNA: ENST00000287936.8

HMGCR-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCR, Length 4,585 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-201ENST00000287936 PER1O15534 1290 aaPredicted RBP12.98□□□□□ -0.33
HMGCR-201ENST00000287936 ESF1Q9H501 851 aaKnown RBP12.98□□□□□ -0.33
HMGCR-201ENST00000287936 PLXNC1O60486 1568 aa12.98□□□□□ -0.33
HMGCR-201ENST00000287936 VGFO15240 615 aaPredicted RBP12.98□□□□□ -0.33
HMGCR-201ENST00000287936 RGS3P49796 1198 aa12.98□□□□□ -0.33
HMGCR-201ENST00000287936 POGKQ9P215 609 aa12.98□□□□□ -0.33
HMGCR-201ENST00000287936 APAF1O14727 1248 aa12.98□□□□□ -0.33
HMGCR-201ENST00000287936 MAPK8IP3Q9UPT6 1336 aa12.97□□□□□ -0.33
HMGCR-201ENST00000287936 MSH5O43196 834 aa12.97□□□□□ -0.33
HMGCR-201ENST00000287936 UNC13BO14795 1591 aa12.97□□□□□ -0.33
HMGCR-201ENST00000287936 CHD1O14646 1710 aa12.97□□□□□ -0.33
HMGCR-201ENST00000287936 UHRF1BP1LA0JNW5 1464 aa12.97□□□□□ -0.33
HMGCR-201ENST00000287936 FRAT1Q92837 279 aaPredicted RBP12.96□□□□□ -0.33
HMGCR-201ENST00000287936 PNNQ9H307 717 aaKnown RBP12.96□□□□□ -0.33
HMGCR-201ENST00000287936 CGNL1Q0VF96 1302 aa12.96□□□□□ -0.33
HMGCR-201ENST00000287936 WDR7Q9Y4E6 1490 aa12.96□□□□□ -0.33
HMGCR-201ENST00000287936 EVC2Q86UK5 1308 aa12.96□□□□□ -0.34
HMGCR-201ENST00000287936 OSCARQ8IYS5 282 aa12.96□□□□□ -0.34
HMGCR-201ENST00000287936 IQGAP3Q86VI3 1631 aa12.95□□□□□ -0.34
HMGCR-201ENST00000287936 SRPK2P78362 688 aaKnown RBP12.95□□□□□ -0.34
HMGCR-201ENST00000287936 CDC42BPBQ9Y5S2 1711 aa12.95□□□□□ -0.34
HMGCR-201ENST00000287936 MYH16Q9H6N6 1097 aa12.95□□□□□ -0.34
HMGCR-201ENST00000287936 DEKP35659 375 aaKnown RBP12.95□□□□□ -0.34
HMGCR-201ENST00000287936 ATP10AO60312 1499 aa12.94□□□□□ -0.34
HMGCR-201ENST00000287936 BECN1Q14457 450 aa12.94□□□□□ -0.34
HMGCR-201ENST00000287936 RPGRIP1LQ68CZ1 1315 aa12.94□□□□□ -0.34
HMGCR-201ENST00000287936 FTSJ3Q8IY81 847 aaKnown RBP12.94□□□□□ -0.34
HMGCR-201ENST00000287936 LAS1LQ9Y4W2 734 aaKnown RBP12.93□□□□□ -0.34
HMGCR-201ENST00000287936 PRDM15P57071 1507 aaPredicted RBP12.93□□□□□ -0.34
HMGCR-201ENST00000287936 ABCC1P33527 1531 aa12.93□□□□□ -0.34
HMGCR-201ENST00000287936 ASXL1Q8IXJ9 1541 aa12.93□□□□□ -0.34
HMGCR-201ENST00000287936 TRPM1Q7Z4N2 1603 aa12.93□□□□□ -0.34
HMGCR-201ENST00000287936 PLA2R1Q13018 1463 aa12.92□□□□□ -0.34
HMGCR-201ENST00000287936 U2SURPO15042 1029 aaKnown RBP12.92□□□□□ -0.34
HMGCR-201ENST00000287936 U2AF1L5P0DN76 240 aaPredicted RBP12.92□□□□□ -0.34
HMGCR-201ENST00000287936 U2AF1Q01081 240 aaKnown RBP eCLIP12.92□□□□□ -0.349e-7■■■■□ 23.5
HMGCR-201ENST00000287936 HDGFL2Q7Z4V5 671 aaPredicted RBP12.91□□□□□ -0.34
HMGCR-201ENST00000287936 TERF2IPQ9NYB0 399 aa12.91□□□□□ -0.34
HMGCR-201ENST00000287936 FAM161AQ3B820 660 aa12.91□□□□□ -0.34
HMGCR-201ENST00000287936 PMFBP1Q8TBY8 1022 aa12.91□□□□□ -0.34
HMGCR-201ENST00000287936 RUNDC1Q96C34 613 aa12.91□□□□□ -0.34
HMGCR-201ENST00000287936 AMER1Q5JTC6 1135 aaPredicted RBP12.9□□□□□ -0.34
HMGCR-201ENST00000287936 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
HMGCR-201ENST00000287936 ATP7AQ04656 1500 aa12.9□□□□□ -0.34
HMGCR-201ENST00000287936 SAFB2Q14151 953 aaKnown RBP eCLIP12.9□□□□□ -0.34
HMGCR-201ENST00000287936 STK26Q9P289 416 aa12.9□□□□□ -0.34
HMGCR-201ENST00000287936 PIK3C2GO75747 1445 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 ZCCHC11Q5TAX3 1644 aaKnown RBP12.89□□□□□ -0.35
HMGCR-201ENST00000287936 NPC1L1Q9UHC9 1359 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 SLFN5Q08AF3 891 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 BACH2Q9BYV9 841 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 ADGRF5Q8IZF2 1346 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 SENP3Q9H4L4 574 aaPredicted RBP12.89□□□□□ -0.35
HMGCR-201ENST00000287936 ZMYM4Q5VZL5 1548 aa12.89□□□□□ -0.35
HMGCR-201ENST00000287936 LAMC1P11047 1609 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 NINLQ9Y2I6 1382 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 AAMPQ13685 434 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 TRPM2O94759 1503 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 USP35Q9P2H5 1018 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 BCL11AQ9H165 835 aa12.88□□□□□ -0.35
HMGCR-201ENST00000287936 ARAP3Q8WWN8 1544 aa12.87□□□□□ -0.35
HMGCR-201ENST00000287936 RWDD1Q9H446 243 aaPredicted RBP12.87□□□□□ -0.35
HMGCR-201ENST00000287936 CD109Q6YHK3 1445 aa12.87□□□□□ -0.35
HMGCR-201ENST00000287936 ASXL2Q76L83 1435 aa12.87□□□□□ -0.35
HMGCR-201ENST00000287936 NUTM2DQ5VT03 806 aaPredicted RBP12.87□□□□□ -0.35
HMGCR-201ENST00000287936 ZNF518AQ6AHZ1 1483 aa12.87□□□□□ -0.35
HMGCR-201ENST00000287936 CHMP4BQ9H444 224 aaKnown RBP12.86□□□□□ -0.35
HMGCR-201ENST00000287936 DUSP27Q5VZP5 1158 aa12.86□□□□□ -0.35
HMGCR-201ENST00000287936 SHROOM2Q13796 1616 aa12.86□□□□□ -0.35
HMGCR-201ENST00000287936 PDE3AQ14432 1141 aa12.85□□□□□ -0.35
HMGCR-201ENST00000287936 TMEM132EQ6IEE7 984 aa12.85□□□□□ -0.35
HMGCR-201ENST00000287936 RRP7AQ9Y3A4 280 aaKnown RBP12.85□□□□□ -0.35
HMGCR-201ENST00000287936 NOS1P29475 1434 aa12.85□□□□□ -0.35
HMGCR-201ENST00000287936 NSD3Q9BZ95 1437 aa12.85□□□□□ -0.35
HMGCR-201ENST00000287936 PTPRTO14522 1441 aa12.84□□□□□ -0.35
HMGCR-201ENST00000287936 ERCC6L2Q5T890 1561 aa12.84□□□□□ -0.35
HMGCR-201ENST00000287936 NKTRP30414 1462 aaKnown RBP12.84□□□□□ -0.35
HMGCR-201ENST00000287936 MAGI2Q86UL8 1455 aa12.84□□□□□ -0.35
HMGCR-201ENST00000287936 PAK3O75914 559 aaPredicted RBP12.84□□□□□ -0.35
HMGCR-201ENST00000287936 SLC12A5Q9H2X9 1139 aa12.83□□□□□ -0.35
HMGCR-201ENST00000287936 IPO8O15397 1037 aaKnown RBP12.83□□□□□ -0.36
HMGCR-201ENST00000287936 HDGFP51858 240 aaKnown RBP12.83□□□□□ -0.36
HMGCR-201ENST00000287936 C14orf93Q9H972 538 aaKnown RBP12.83□□□□□ -0.36
HMGCR-201ENST00000287936 SLC52A1Q9NWF4 448 aa12.83□□□□□ -0.36
HMGCR-201ENST00000287936 ZFYVE16Q7Z3T8 1539 aa12.83□□□□□ -0.36
HMGCR-201ENST00000287936 SYNMO15061 1565 aa12.83□□□□□ -0.36
HMGCR-201ENST00000287936 MTHFSP49914 203 aa12.83□□□□□ -0.36
HMGCR-201ENST00000287936 TCP11L2Q8N4U5 519 aa12.82□□□□□ -0.36
HMGCR-201ENST00000287936 COG6Q9Y2V7 657 aa12.82□□□□□ -0.36
HMGCR-201ENST00000287936 CALD1Q05682 793 aaKnown RBP12.82□□□□□ -0.36
HMGCR-201ENST00000287936 CLUAP1Q96AJ1 413 aa12.82□□□□□ -0.36
HMGCR-201ENST00000287936 WDR63Q8IWG1 891 aa12.81□□□□□ -0.36
HMGCR-201ENST00000287936 TET3O43151 1660 aa12.81□□□□□ -0.36
HMGCR-201ENST00000287936 SMC4Q9NTJ3 1288 aa12.81□□□□□ -0.36
HMGCR-201ENST00000287936 ZKSCAN2Q63HK3 967 aa12.8□□□□□ -0.36
HMGCR-201ENST00000287936 C20orf194Q5TEA3 1177 aa12.8□□□□□ -0.36
HMGCR-201ENST00000287936 PLEKHH1Q9ULM0 1364 aa12.79□□□□□ -0.36
HMGCR-201ENST00000287936 MYOM2P54296 1465 aa12.79□□□□□ -0.36
HMGCR-201ENST00000287936 KDM5AP29375 1690 aaKnown RBP12.79□□□□□ -0.36
HMGCR-201ENST00000287936 POLR3AO14802 1390 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms