RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 IQGAP2Q13576 1575 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 TERF2IPQ9NYB0 399 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 PDZRN3Q9UPQ7 1066 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 TAOK2Q9UL54 1235 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 ROCK1Q13464 1354 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 THOC2Q8NI27 1593 aaKnown RBP5.77□□□□□ -1.49
VPS13C-201ENST00000249837 DZIP1LQ8IYY4 767 aaKnown RBP5.77□□□□□ -1.49
VPS13C-201ENST00000249837 SLC4A10Q6U841 1118 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 TCP11L2Q8N4U5 519 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 NUTM2FA1L443 756 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 CALD1Q05682 793 aaKnown RBP5.77□□□□□ -1.49
VPS13C-201ENST00000249837 CABP2Q9NPB3 220 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 CAMSAP2Q08AD1 1489 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 GGNBP2Q9H3C7 697 aa5.77□□□□□ -1.49
VPS13C-201ENST00000249837 RIPK4P57078 832 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 SLC12A5Q9H2X9 1139 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 RPRD2Q5VT52 1461 aaKnown RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 LTV1Q96GA3 475 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 EVC2Q86UK5 1308 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 ARHGAP5Q13017 1502 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 RTF1Q92541 710 aaKnown RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 NAP1L2Q9ULW6 460 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 FOXD4L6Q3SYB3 417 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 LMOD2Q6P5Q4 547 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 FOXD4L3Q6VB84 417 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-201ENST00000249837 CHMP5Q9NZZ3 219 aa5.76□□□□□ -1.49
VPS13C-201ENST00000249837 MTHFSP49914 203 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 SLFN5Q08AF3 891 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 CTTNBP2Q8WZ74 1663 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 RSPH6AQ9H0K4 717 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 URB2Q14146 1524 aaKnown RBP5.75□□□□□ -1.49
VPS13C-201ENST00000249837 TSR2Q969E8 191 aaKnown RBP5.75□□□□□ -1.49
VPS13C-201ENST00000249837 C1orf115Q9H7X2 142 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 HMOX1P09601 288 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 MSNP26038 577 aaKnown RBP5.75□□□□□ -1.49
VPS13C-201ENST00000249837 DDX11L8A8MPP1 907 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 NGEFQ8N5V2 710 aa5.75□□□□□ -1.49
VPS13C-201ENST00000249837 TRIM6-TRIM34B2RNG4 842 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 MCCP23508 829 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 FGD1P98174 961 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 TRAK2O60296 914 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 EXOSC9Q06265 439 aaKnown RBP5.74□□□□□ -1.49
VPS13C-201ENST00000249837 PLB1Q6P1J6 1458 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 A0A0G2JS52 829 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 UGGT2Q9NYU1 1516 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 ARHGEF11O15085 1522 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 PTMSP20962 102 aa5.74□□□□□ -1.49
VPS13C-201ENST00000249837 DDX49Q9Y6V7 483 aaKnown RBP5.74□□□□□ -1.49
VPS13C-201ENST00000249837 GOLGA6L4A6NEF3 574 aa5.73□□□□□ -1.49
VPS13C-201ENST00000249837 SNAPC4Q5SXM2 1469 aa5.73□□□□□ -1.49
VPS13C-201ENST00000249837 DIAPH1O60610 1272 aaKnown RBP5.73□□□□□ -1.49
VPS13C-201ENST00000249837 NOB1Q9ULX3 412 aaKnown RBP5.73□□□□□ -1.49
VPS13C-201ENST00000249837 PDE3AQ14432 1141 aa5.73□□□□□ -1.49
VPS13C-201ENST00000249837 KIAA1211Q6ZU35 1233 aa5.73□□□□□ -1.49
VPS13C-201ENST00000249837 MRC2Q9UBG0 1479 aa5.73□□□□□ -1.49
VPS13C-201ENST00000249837 DDX19BQ9UMR2 479 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 MCM4P33991 863 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 DRC7Q8IY82 874 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 SYNJ2O15056 1496 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 KIAA2012Q0VF49 1180 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 RILPL2Q969X0 211 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 NECTIN2Q92692 538 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 STK31Q9BXU1 1019 aa5.72□□□□□ -1.49
VPS13C-201ENST00000249837 VSIG10Q8N0Z9 540 aa5.71□□□□□ -1.49
VPS13C-201ENST00000249837 VGFO15240 615 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-201ENST00000249837 DISP3Q9P2K9 1392 aa5.71□□□□□ -1.5
VPS13C-201ENST00000249837 HMMRO75330 724 aa5.71□□□□□ -1.5
VPS13C-201ENST00000249837 KIAA0586Q9BVV6 1533 aa5.71□□□□□ -1.5
VPS13C-201ENST00000249837 IGHDP01880 384 aa5.71□□□□□ -1.5
VPS13C-201ENST00000249837 DHX29Q7Z478 1369 aaKnown RBP5.71□□□□□ -1.5
VPS13C-201ENST00000249837 DUSP27Q5VZP5 1158 aa5.71□□□□□ -1.5
VPS13C-201ENST00000249837 ZNF608Q9ULD9 1512 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-201ENST00000249837 MCTP1Q6DN14 999 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 WWC1Q8IX03 1113 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 CFAP44Q96MT7 982 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 LMOD3Q0VAK6 560 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 GPATCH8Q9UKJ3 1502 aaKnown RBP5.7□□□□□ -1.5
VPS13C-201ENST00000249837 NSD3Q9BZ95 1437 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 HSP90AA2PQ14568 343 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-201ENST00000249837 ZRSR1Q15695 479 aaKnown RBP5.7□□□□□ -1.5
VPS13C-201ENST00000249837 MPNDQ8N594 471 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 SSH1Q8WYL5 1049 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 API5Q9BZZ5 524 aaKnown RBP5.7□□□□□ -1.5
VPS13C-201ENST00000249837 IFT140Q96RY7 1462 aa5.7□□□□□ -1.5
VPS13C-201ENST00000249837 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 NGDNQ8NEJ9 315 aaKnown RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 ST18O60284 1047 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 AMPHP49418 695 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 HAP1P54257 671 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 SKOR2Q2VWA4 1001 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 WDR63Q8IWG1 891 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 KDM6BO15054 1643 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 PLEKHH2Q8IVE3 1493 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 PRKAR2BP31323 418 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 CCDC9Q9Y3X0 531 aaKnown RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 THUMPD2Q9BTF0 503 aaKnown RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 NASPP49321 788 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 TNNQ9UQP3 1299 aa5.69□□□□□ -1.5
VPS13C-201ENST00000249837 RARSP54136 660 aaKnown RBP5.69□□□□□ -1.5
VPS13C-201ENST00000249837 TMEM57Q8N5G2 664 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms