RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	ATG17	Q06410	417 aa		1.14	□□□□□ -2.23
SHE9	YDR393W	YPR147C	Q06522	304 aa	Known RBP	1.14	□□□□□ -2.23
SHE9	YDR393W	YLR462W	O13556	202 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	YHR032W-A	P0C5N6	59 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	POL30	P15873	258 aa	Known RBP	1.13	□□□□□ -2.23
SHE9	YDR393W	QRI5	P32344	111 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	KDX1	P36005	433 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	RRF1	P38771	230 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	RCY1	P39531	840 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	YEL075C	P39972	122 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	GLG2	P47011	380 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	YJR079W	P47126	109 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	ERV25	P54837	211 aa	Known RBP	1.13	□□□□□ -2.23
SHE9	YDR393W	GOT1	Q03554	138 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	YLR179C	Q06252	201 aa	Known RBP	1.13	□□□□□ -2.23
SHE9	YDR393W	ATO3	Q12359	275 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	URA2	P07259	2214 aa	Known RBP	1.13	□□□□□ -2.23
SHE9	YDR393W	BPH1	P25356	2167 aa		1.13	□□□□□ -2.23
SHE9	YDR393W	MDN1	Q12019	4910 aa	Known RBP	1.12	□□□□□ -2.23
SHE9	YDR393W	FAS1	P07149	2051 aa	Known RBP	1.12	□□□□□ -2.23
SHE9	YDR393W	YKR104W	P0CE69	306 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	SCL1	P21243	252 aa	Known RBP	1.12	□□□□□ -2.23
SHE9	YDR393W	VMA11	P32842	164 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	YHR125W	P38831	101 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	PET100	P38958	111 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	AKR2	Q12013	749 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	PEX11	Q12462	236 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	BLM10	P43583	2143 aa		1.12	□□□□□ -2.23
SHE9	YDR393W	CDC7	P06243	507 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	PEX4	P29340	183 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	TAF14	P35189	244 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	JEN1	P36035	616 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	MRPL39	P36533	70 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	PRS2	P38620	318 aa	Known RBP	1.11	□□□□□ -2.23
SHE9	YDR393W	DOG1	P38774	246 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	ERG25	P53045	309 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	MRH4	P53166	561 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	YGL034C	P53186	121 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	TIM8	P57744	87 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	MRPS8	Q03799	155 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	FAR8	Q05040	523 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	YPR114W	Q06107	315 aa		1.11	□□□□□ -2.23
SHE9	YDR393W	SYC1	Q08553	188 aa	Predicted RBP	1.11	□□□□□ -2.23
SHE9	YDR393W	CYR1	P08678	2026 aa	Known RBP	1.11	□□□□□ -2.23
SHE9	YDR393W	JIP3	O13555	125 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	COX5A	P00424	153 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	DSF1	P0CX08	502 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	YNR073C	P0CX09	502 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	OM45	P16547	393 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	1.1	□□□□□ -2.23	not detected
SHE9	YDR393W	UBC6	P33296	250 aa	Predicted RBP	1.1	□□□□□ -2.23
SHE9	YDR393W	OPY1	P38271	328 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	FZO1	P38297	855 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	EDC3	P39998	551 aa	Known RBP	1.1	□□□□□ -2.23
SHE9	YDR393W	VTC1	P40046	129 aa	RIP-Chip data	1.1	□□□□□ -2.23	not detected
SHE9	YDR393W	SMD3	P43321	101 aa	Known RBP	1.1	□□□□□ -2.23
SHE9	YDR393W	SNZ3	P43545	298 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	YGR219W	P53307	113 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	YDR209C	Q03480	137 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	ARO80	Q04052	950 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	ADH6	Q04894	360 aa	Known RBP	1.1	□□□□□ -2.23
SHE9	YDR393W	YLR030W	Q07967	263 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	GIS3	Q12418	502 aa		1.1	□□□□□ -2.23
SHE9	YDR393W	COX2	P00410	251 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	RAS2	P01120	322 aa	Known RBP	1.09	□□□□□ -2.23
SHE9	YDR393W	YOL162W	P0CF19	215 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	MATALPHA2	P0CY08	210 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	HMLALPHA2	P0CY09	210 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	MDH2	P22133	377 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	ERG24	P32462	438 aa	Known RBP	1.09	□□□□□ -2.23
SHE9	YDR393W	MSA2	P36157	363 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	MRPL37	P36532	105 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	THO1	P40040	218 aa	Known RBP	1.09	□□□□□ -2.23
SHE9	YDR393W	PRM10	P42946	383 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	RMR1	P53060	241 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	TIM13	P53299	105 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	RTC4	P53850	401 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	SWC7	Q06707	132 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	YOR342C	Q12182	319 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	TPO4	Q12256	659 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	STT4	P37297	1900 aa		1.09	□□□□□ -2.23
SHE9	YDR393W	RPL9A	P05738	191 aa	Known RBP	1.08	□□□□□ -2.24
SHE9	YDR393W	YHR022C	P38763	256 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	CYC2	P38909	366 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	BMT5	P40493	336 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	YIL086C	P40503	102 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	JHD2	P47156	728 aa	Predicted RBP	1.08	□□□□□ -2.24
SHE9	YDR393W	RPL9B	P51401	191 aa	Known RBP	1.08	□□□□□ -2.24
SHE9	YDR393W	YGL159W	P53110	370 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	CYT2	Q00873	224 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	YPR098C	Q06089	161 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	1.08	□□□□□ -2.24	not detected
SHE9	YDR393W	COQ10	Q08058	207 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	RRP40	Q08285	240 aa	Known RBP	1.08	□□□□□ -2.24
SHE9	YDR393W	YPL257W	Q08974	193 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	DCN1	Q12395	269 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	DBF2	P22204	572 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	MRPL15	P36523	253 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	ERV15	P38312	142 aa		1.08	□□□□□ -2.24
SHE9	YDR393W	DSE2	P38844	325 aa		1.08	□□□□□ -2.24

Retrieved 100 of 5,963 RNA–protein pairs in 66.7 ms