RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PDXKO00764 312 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 TGFB1I1O43294 461 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 CALUO43852 315 aaPredicted RBP14.06□□□□□ -0.16
CLK3-224ENST00000568605 LILRB3O75022 631 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 PRPF40AO75400 957 aaKnown RBP14.06□□□□□ -0.16
CLK3-224ENST00000568605 C1RP00736 705 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 FGFR3P22607 806 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 KCNQ1P51787 676 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 TFAMQ00059 246 aaKnown RBP14.06□□□□□ -0.16
CLK3-224ENST00000568605 KCNC3Q14003 757 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 ANKRD54Q6NXT1 300 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 GUF1Q8N442 669 aaKnown RBP14.06□□□□□ -0.16
CLK3-224ENST00000568605 SMRP1Q8NCR6 262 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 APPL2Q8NEU8 664 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 ANKRD36BP1Q96IX9 119 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 SUSD3Q96L08 255 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 B3GALT6Q96L58 329 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 FBXL18Q96ME1 805 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 FNBP1Q96RU3 617 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 SFXN1Q9H9B4 322 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 DPP3Q9NY33 737 aa14.06□□□□□ -0.16
CLK3-224ENST00000568605 GOLGA6L22H0YM25 854 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 H7C4K7 107 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CLIC2O15247 247 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 TEX28O15482 410 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 EXOC3O60645 756 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 TNNC2P02585 160 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 ODC1P11926 461 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 PNPLA4P41247 253 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 BRCC3P46736 316 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CLCN4P51793 760 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 DLX2Q07687 328 aaPredicted RBP14.05□□□□□ -0.16
CLK3-224ENST00000568605 STIM1Q13586 685 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CLUL1Q15846 466 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 SV2CQ496J9 727 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 C9orf57Q5W0N0 161 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 ZNF280DQ6N043 979 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CES5AQ6NT32 575 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 PRSS55Q6UWB4 352 aaPredicted RBP14.05□□□□□ -0.16
CLK3-224ENST00000568605 TAS1R1Q7RTX1 841 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 USP37Q86T82 979 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CBWD2Q8IUF1 395 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 EFCAB13Q8IY85 973 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 VN1R2Q8NFZ6 395 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 MSLNLQ96KJ4 702 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 CLEC1BQ9P126 229 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 ITGA11Q9UKX5 1188 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 PCDHB8Q9UN66 801 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 DENND4CQ5VZ89 1909 aa14.05□□□□□ -0.16
CLK3-224ENST00000568605 ZNF638Q14966 1978 aaKnown RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 DOCK6Q96HP0 2047 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 DOCK8Q8NF50 2099 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 GRXCR2A6NFK2 248 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 I3L4J1 428 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 MBTPS2O43462 519 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 GADD45BO75293 160 aaPredicted RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 TKTP29401 623 aaKnown RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 PPP1R2P41236 205 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 TAF6P49848 677 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 ITIH3Q06033 890 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 MYBPC2Q14324 1141 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 VARS2Q5ST30 1063 aaKnown RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 ZNF658Q5TYW1 1059 aaPredicted RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 DSTYKQ6XUX3 929 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 WDR49Q8IV35 697 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 SLC9A9Q8IVB4 645 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 LNX1Q8TBB1 728 aaPredicted RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 ADAMTS19Q8TE59 1207 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 SLC22A17Q8WUG5 538 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 HDAC7Q8WUI4 952 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 POP1Q99575 1024 aaKnown RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 OXCT2Q9BYC2 517 aaPredicted RBP14.04□□□□□ -0.16
CLK3-224ENST00000568605 KCTD10Q9H3F6 313 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 PLEKHA4Q9H4M7 779 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 PDE11AQ9HCR9 933 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 MAN1C1Q9NR34 630 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 MTRRQ9UBK8 725 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 FRMD4BQ9Y2L6 1034 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 BACE2Q9Y5Z0 518 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 OBSL1O75147 1896 aa14.04□□□□□ -0.16
CLK3-224ENST00000568605 ANO9A1A5B4 782 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 M0QZQ0 153 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 PIRO00625 290 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 NR3C1P04150 777 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 ITGB3P05106 788 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 EPCAMP16422 314 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 TNNI1P19237 187 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 RPL13P26373 211 aaKnown RBP14.03□□□□□ -0.16
CLK3-224ENST00000568605 AARSP49588 968 aaKnown RBP eCLIP14.03□□□□□ -0.16
CLK3-224ENST00000568605 GUCY2FP51841 1108 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 RBM10P98175 930 aaKnown RBP14.03□□□□□ -0.16
CLK3-224ENST00000568605 YWHAHQ04917 246 aaPredicted RBP14.03□□□□□ -0.16
CLK3-224ENST00000568605 CYP24A1Q07973 514 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 SMAD2Q15796 467 aaKnown RBP14.03□□□□□ -0.16
CLK3-224ENST00000568605 NFIL3Q16649 462 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 LIN9Q5TKA1 542 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 CD300LGQ6UXG3 332 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 CLEC17AQ6ZS10 378 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 GLYCTKQ8IVS8 523 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms