RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SATB1Q01826 763 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 DGKKQ5KSL6 1271 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 ZNF280DQ6N043 979 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 AFF4Q9UHB7 1163 aaKnown RBP18.55■□□□□ 0.56
VPS29-204ENST00000548259 FBXL5Q9UKA1 691 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 ANGPTL2Q9UKU9 493 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 TNFSF13BQ9Y275 285 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 F5P12259 2224 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 CHD8Q9HCK8 2581 aa18.55■□□□□ 0.56
VPS29-204ENST00000548259 DOCK6Q96HP0 2047 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 CHURC1-FNTBB4DL54 471 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 PAPSS2O95340 614 aaPredicted RBP18.54■□□□□ 0.56
VPS29-204ENST00000548259 MUTP22033 750 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 RPA1P27694 616 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 MARCKSP29966 332 aaPredicted RBP18.54■□□□□ 0.56
VPS29-204ENST00000548259 FNTBP49356 437 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 PTGDRQ13258 359 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 PLD1Q13393 1074 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 ZNF568Q3ZCX4 644 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 HAUS3Q68CZ6 603 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 HAUS6Q7Z4H7 955 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 C3orf58Q8NDZ4 430 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 BSNDQ8WZ55 320 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 TNFRSF25Q93038 417 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 OXCT2Q9BYC2 517 aaPredicted RBP18.54■□□□□ 0.56
VPS29-204ENST00000548259 USP20Q9Y2K6 914 aa18.54■□□□□ 0.56
VPS29-204ENST00000548259 HEPACAM2A8MVW5 462 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 CHADO15335 359 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 CPB1P15086 417 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 VIPR2P41587 438 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 TWF1Q12792 350 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 AASDHQ4L235 1098 aaPredicted RBP18.53■□□□□ 0.56
VPS29-204ENST00000548259 CD300LGQ6UXG3 332 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 DIS3L2Q8IYB7 885 aaKnown RBP18.53■□□□□ 0.56
VPS29-204ENST00000548259 C12orf50Q8NA57 414 aaPredicted RBP18.53■□□□□ 0.56
VPS29-204ENST00000548259 ACAP3Q96P50 834 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 TCHPQ9BT92 498 aa18.53■□□□□ 0.56
VPS29-204ENST00000548259 BTBD18B2RXH4 712 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 DPYSL4O14531 572 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 HRO43593 1189 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 MED24O75448 989 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 SEC24AO95486 1093 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 MCM4P33991 863 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 MCM7P33993 719 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 CCR2P41597 374 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 EPHA5P54756 1037 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 MRPL58Q14197 206 aaKnown RBP18.52■□□□□ 0.56
VPS29-204ENST00000548259 SAFBQ15424 915 aaKnown RBP eCLIP18.52■□□□□ 0.56
VPS29-204ENST00000548259 XKR4Q5GH76 650 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 NT5DC1Q5TFE4 455 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 ZSWIM3Q96MP5 696 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 KIFC3Q9BVG8 833 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 MRPL4Q9BYD3 311 aaKnown RBP18.52■□□□□ 0.56
VPS29-204ENST00000548259 TPCN1Q9ULQ1 816 aa18.52■□□□□ 0.56
VPS29-204ENST00000548259 CCDC169A6NNP5 214 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 KCNE1P15382 129 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 IGFBP6P24592 240 aaPredicted RBP18.51■□□□□ 0.55
VPS29-204ENST00000548259 HOXA6P31267 233 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 EPHB3P54753 998 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 OSTNP61366 133 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 HEATR6Q6AI08 1181 aaKnown RBP18.51■□□□□ 0.55
VPS29-204ENST00000548259 POTEHQ6S545 545 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 ALKAL1Q6UXT8 129 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 RALGPS2Q86X27 583 aaPredicted RBP18.51■□□□□ 0.55
VPS29-204ENST00000548259 HS6ST3Q8IZP7 471 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 SYNPOQ8N3V7 929 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 SUSD3Q96L08 255 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 CEP72Q9P209 647 aa18.51■□□□□ 0.55
VPS29-204ENST00000548259 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.51■□□□□ 0.55
VPS29-204ENST00000548259 MAP1BP46821 2468 aaKnown RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 CTDNEP1O95476 244 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 FGF19O95750 216 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 EDN1P05305 212 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 MCF2P10911 925 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 LIMK1P53667 647 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 SOX4Q06945 474 aaPredicted RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 DMP1Q13316 513 aaPredicted RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 ORC2Q13416 577 aaPredicted RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 TEAD2Q15562 447 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 FAM160A2Q8N612 972 aaPredicted RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 LOXL4Q96JB6 756 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 ACO2Q99798 780 aaKnown RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 CDT1Q9H211 546 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 RBM19Q9Y4C8 960 aaKnown RBP18.5■□□□□ 0.55
VPS29-204ENST00000548259 STK24Q9Y6E0 443 aa18.5■□□□□ 0.55
VPS29-204ENST00000548259 NOTCH4Q99466 2003 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 SLC38A8A6NNN8 435 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 OR52Z1P0C646 297 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 GJA1P17302 382 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 ALDH1A3P47895 512 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 FCHO2Q0JRZ9 810 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 PTPAQ15257 358 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 ARHGAP29Q52LW3 1261 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 WDR5BQ86VZ2 330 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 DDX12PQ92771 950 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 TBC1D32Q96NH3 1257 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 TMEM60Q9H2L4 133 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 BHMT2Q9H2M3 363 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 TMEM134Q9H6X4 195 aa18.49■□□□□ 0.55
VPS29-204ENST00000548259 CNTN3Q9P232 1028 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms