RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	FMO5	P49326	533 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	MXI1	P50539	228 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	RBP5	P82980	135 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	SMAD3	P84022	425 aa	Known RBP	12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	TRPC3	Q13507	836 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	KRT31	Q15323	416 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	UPP1	Q16831	310 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	LRIT3	Q3SXY7	679 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	ZACN	Q401N2	412 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	VWA3B	Q502W6	1294 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	TDRD10	Q5VZ19	366 aa	Known RBP	12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	C9orf57	Q5W0N0	161 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	KRT39	Q6A163	491 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	DCLRE1A	Q6PJP8	1040 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	KCNT2	Q6UVM3	1135 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	C15orf39	Q6ZRI6	1047 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	GAS2L3	Q86XJ1	694 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	CLP1	Q92989	425 aa	Known RBP	12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	ZNF558	Q96NG5	402 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	PAAF1	Q9BRP4	392 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	COLEC11	Q9BWP8	271 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	TAB2	Q9NYJ8	693 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	AGAP1	Q9UPQ3	857 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	PRG3	Q9Y2Y8	225 aa	Predicted RBP	12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	PCDHB12	Q9Y5F1	795 aa		12.51	□□□□□ -0.41
YBX3-213	ENST00000542641	ANO9	A1A5B4	782 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CARNS1	A5YM72	827 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	NT5C1B-RDH14	C9J2C7	533 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	PIR	O00625	290 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	N4BP1	O75113	896 aa	Known RBP	12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	TADA2A	O75478	443 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	B3GAT3	O94766	335 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CST3	P01034	146 aa	Predicted RBP	12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	POLR2B	P30876	1174 aa	Known RBP	12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CETN1	Q12798	172 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	NCOA4	Q13772	614 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CBWD6	Q4V339	395 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CBWD3	Q5JTY5	395 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CBWD5	Q5RIA9	395 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	SCARA3	Q6AZY7	606 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	COLGALT1	Q8NBJ5	622 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CXorf38	Q8TB03	319 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	TAS1R2	Q8TE23	839 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	RBSN	Q9H1K0	784 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	VPS16	Q9H269	839 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	NKX2-4	Q9H2Z4	354 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	NDST4	Q9H3R1	872 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	SLC28A3	Q9HAS3	691 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	LIMA1	Q9UHB6	759 aa	Known RBP	12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	SIX4	Q9UIU6	781 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	METRN	Q9UJH8	293 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	RWDD3	Q9Y3V2	267 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	COL4A6	Q14031	1691 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	CIT	O14578	2027 aa		12.5	□□□□□ -0.41
YBX3-213	ENST00000542641	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	LRRC10B	A6NIK2	292 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	PPEF2	O14830	753 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	CLSTN1	O94985	981 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	ARHGEF15	O94989	841 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	SERPINC1	P01008	464 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	LINC00271	P0C7V0	271 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	DNAJB2	P25686	324 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	CTNNB1	P35222	781 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	BMPR1A	P36894	532 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	PIK3CA	P42336	1068 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	COPB1	P53618	953 aa	Known RBP	12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	MYL7	Q01449	175 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	TAP1	Q03518	808 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	MYO1E	Q12965	1108 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	MIIP	Q5JXC2	388 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	PPP2R2D	Q66LE6	453 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	LRRC52	Q8N7C0	313 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	FBXL13	Q8NEE6	735 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	HASPIN	Q8TF76	798 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	TIFA	Q96CG3	184 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	HPDL	Q96IR7	371 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	TGS1	Q96RS0	853 aa	Known RBP	12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	C17orf80	Q9BSJ5	609 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	SPG21	Q9NZD8	308 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	MTUS1	Q9ULD2	1270 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	NUB1	Q9Y5A7	615 aa		12.49	□□□□□ -0.41
YBX3-213	ENST00000542641	RALGAPA2	Q2PPJ7	1873 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641		F8W810	466 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	TMEM189-UBE2V1	I3L0A0	370 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	PMM2	O15305	246 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	P4HA2	O15460	535 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	TRAPPC3	O43617	180 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	KIF4A	O95239	1232 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	VNN1	O95497	513 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	HLA-DRA	P01903	254 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	ITGB1	P05556	798 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	IGFBP6	P24592	240 aa	Predicted RBP	12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	ATIC	P31939	592 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	PPM1A	P35813	382 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	PNPLA4	P41247	253 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	TAF6	P49848	677 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	LILRA4	P59901	499 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	MYL6	P60660	151 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	SGSM1	Q2NKQ1	1148 aa		12.48	□□□□□ -0.41
YBX3-213	ENST00000542641	FILIP1L	Q4L180	1135 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms