RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	AKAP3	O75969	853 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	REC8	O95072	547 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	EPN2	O95208	641 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	PROS1	P07225	676 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	ATP2B1	P20020	1258 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	KPNA1	P52294	538 aa	Predicted RBP	13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	YARS	P54577	528 aa	Known RBP	13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZNF280D	Q6N043	979 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	CD300LG	Q6UXG3	332 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	DEPTOR	Q8TB45	409 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	FAM200A	Q8TCP9	573 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	IPO9	Q96P70	1041 aa	Known RBP	13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	CXCL16	Q9H2A7	254 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZSWIM6	Q9HCJ5	1215 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	TUFT1	Q9NNX1	390 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	AFF4	Q9UHB7	1163 aa	Known RBP	13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	CYP46A1	Q9Y6A2	500 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	FRY	Q5TBA9	3013 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	WDFY3	Q8IZQ1	3526 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	HEPACAM2	A8MVW5	462 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079		I3L4J1	428 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	NEMF	O60524	1076 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	MOSPD3	O75425	235 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	SEC24B	O95487	1268 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	BRCC3	P46736	316 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	SRSF5	Q13243	272 aa	Known RBP	13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	PLD1	Q13393	1074 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	MRPL58	Q14197	206 aa	Known RBP	13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	XKR4	Q5GH76	650 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	ATF7IP2	Q5U623	682 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	MAEA	Q7L5Y9	396 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	WASF1	Q92558	559 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	ZSWIM3	Q96MP5	696 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	CCDC94	Q9BW85	323 aa	Predicted RBP	13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	OXCT2	Q9BYC2	517 aa	Predicted RBP	13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	SLITRK6	Q9H5Y7	841 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	GOLGA2P5	Q9HBQ8	144 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	FBXL5	Q9UKA1	691 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	NCAN	O14594	1321 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	PHLPP2	Q6ZVD8	1323 aa		13.64	□□□□□ -0.23
CAPN1-223	ENST00000533079	SMIM28	A0A1B0GU29	152 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	SPECC1L-ADORA2A	F8WAN1	911 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	PODXL	O00592	558 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	NRG2	O14511	850 aa	Predicted RBP	13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	SEC24A	O95486	1093 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	CTH	P32929	405 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	RPL9	P32969	192 aa	Known RBP	13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	KRT2	P35908	639 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	VIPR2	P41587	438 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	GRM5	P41594	1212 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	RAP1GAP	P47736	663 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	TWF1	Q12792	350 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	CCIN	Q13939	588 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	CTXN3	Q4LDR2	81 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	EEF1DP3	Q658K8	133 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079		Q6ZS52	159 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	CACNA2D4	Q7Z3S7	1137 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	HAUS6	Q7Z4H7	955 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	APPL2	Q8NEU8	664 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	OXER1	Q8TDS5	423 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	GAB3	Q8WWW8	586 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	NACC1	Q96RE7	527 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	OBP2A	Q9NY56	170 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	CEP72	Q9P209	647 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	TNFSF13B	Q9Y275	285 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	NUB1	Q9Y5A7	615 aa		13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.63	□□□□□ -0.23
CAPN1-223	ENST00000533079	TMEM8B	A6NDV4	472 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	SLC38A8	A6NNN8	435 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	RPP40	O75818	363 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	FGF19	O95750	216 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	EDN1	P05305	212 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	MYL4	P12829	197 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	IGFBP6	P24592	240 aa	Predicted RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	ARPP19	P56211	112 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	PLCB2	Q00722	1185 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	STK3	Q13188	491 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	SF3A2	Q15428	464 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	TEAD2	Q15562	447 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	ARHGAP29	Q52LW3	1261 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	EARS2	Q5JPH6	523 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	PLA2G2C	Q5R387	149 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	STPG1	Q5TH74	334 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	HEATR6	Q6AI08	1181 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	UNQ6494/PRO21346	Q6UXR6	183 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	ALKAL1	Q6UXT8	129 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	BSND	Q8WZ55	320 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	TNFRSF25	Q93038	417 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	SUSD3	Q96L08	255 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	IFT74	Q96LB3	600 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	TBC1D32	Q96NH3	1257 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	LSM14B	Q9BX40	385 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	TM6SF1	Q9BZW5	370 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	ARRDC1-AS1	Q9H2J1	176 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	RBM12	Q9NTZ6	932 aa	Known RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	YIPF1	Q9Y548	306 aa		13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.62	□□□□□ -0.23
CAPN1-223	ENST00000533079	ARHGEF35	A5YM69	484 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms