RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 CCDC127Q96BQ5 260 aa14.65□□□□□ -0.06
COL1A1-208ENST00000494334 PABPC5Q96DU9 382 aaKnown RBP14.65□□□□□ -0.06
COL1A1-208ENST00000494334 KLHL5Q96PQ7 755 aa14.65□□□□□ -0.06
COL1A1-208ENST00000494334 POP1Q99575 1024 aaKnown RBP14.65□□□□□ -0.06
COL1A1-208ENST00000494334 CDCA3Q99618 268 aaPredicted RBP14.65□□□□□ -0.06
COL1A1-208ENST00000494334 RXFP1Q9HBX9 757 aa14.65□□□□□ -0.06
COL1A1-208ENST00000494334 INTS13Q9NVM9 706 aa14.65□□□□□ -0.06
COL1A1-208ENST00000494334 PTPRJQ12913 1337 aa14.65□□□□□ -0.06
COL1A1-208ENST00000494334 SPTLC1O15269 473 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 LINC01565O15544 149 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 CLASP2O75122 1294 aaKnown RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 AKAP3O75969 853 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 TMEM191BP0C7N4 346 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 DLATP10515 647 aaKnown RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 CCNE1P24864 410 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 RPL13P26373 211 aaKnown RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 TKTP29401 623 aaKnown RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 MCM4P33991 863 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 PPP1R2P41236 205 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 AARSP49588 968 aaKnown RBP eCLIP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 LILRA4P59901 499 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 STIM1Q13586 685 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 KCNC3Q14003 757 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 ANKRD40Q6AI12 368 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 PRSS55Q6UWB4 352 aaPredicted RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 WDR49Q8IV35 697 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 EFHBQ8N7U6 833 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 CXorf38Q8TB03 319 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 LNX1Q8TBB1 728 aaPredicted RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 PARD3BQ8TEW8 1205 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 PIK3R5Q8WYR1 880 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 HLA-CQ95604 372 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 DHTKD1Q96HY7 919 aaPredicted RBP14.64□□□□□ -0.07
COL1A1-208ENST00000494334 ANKRD36BP1Q96IX9 119 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 SUSD3Q96L08 255 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 FNBP1Q96RU3 617 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 CGRRF1Q99675 332 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 EMILIN2Q9BXX0 1053 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 MTMR12Q9C0I1 747 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 CLDND1Q9NY35 253 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 COG5Q9UP83 839 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 FRMD4BQ9Y2L6 1034 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 ATG2AQ2TAZ0 1938 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 EYSQ5T1H1 3165 aa14.64□□□□□ -0.07
COL1A1-208ENST00000494334 COL6A3P12111 3177 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 TRIM49BA6NDI0 452 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 M0QZQ0 153 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 PSMA7O14818 248 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 SYN3O14994 580 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 MAPK13O15264 365 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 TEX28O15482 410 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 GLP2RO95838 553 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 ITGB3P05106 788 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 TNNI1P19237 187 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 POLR2BP30876 1174 aaKnown RBP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 LTBRP36941 435 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 RBM10P98175 930 aaKnown RBP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 DLX2Q07687 328 aaPredicted RBP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 DUOXA2Q1HG44 320 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 CSGALNACT2Q8N6G5 542 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 VN1R2Q8NFZ6 395 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 ZNF516Q92618 1163 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 EEF2KMTQ96G04 330 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 BORCS6Q96GS4 357 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 TSG101Q99816 390 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 UBE2ZQ9H832 354 aaPredicted RBP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 FNIP2Q9P278 1114 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 SIX4Q9UIU6 781 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 ITGA11Q9UKX5 1188 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 AGAP1Q9UPQ3 857 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 HCFC2Q9Y5Z7 792 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 TRANK1O15050 2925 aa14.63□□□□□ -0.07
COL1A1-208ENST00000494334 PDCD11Q14690 1871 aaKnown RBP14.63□□□□□ -0.07
COL1A1-208ENST00000494334 LRRIQ3A6PVS8 624 aaPredicted RBP14.62□□□□□ -0.07
COL1A1-208ENST00000494334 CETN3O15182 167 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 MBD3O95983 291 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 TNNC2P02585 160 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 KRT19P08727 400 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 ANK1P16157 1881 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 RPL17P18621 184 aaKnown RBP14.62□□□□□ -0.07
COL1A1-208ENST00000494334 PAX3P23760 479 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 KLRC2P26717 231 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 PSMC2P35998 433 aaKnown RBP14.62□□□□□ -0.07
COL1A1-208ENST00000494334 TAF6P49848 677 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 DLG4P78352 724 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 CLDN10P78369 228 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 FKBP3Q00688 224 aaKnown RBP14.62□□□□□ -0.07
COL1A1-208ENST00000494334 LRRC63Q05C16 580 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 PSMD5Q16401 504 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 KLHL10Q6JEL2 608 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 DSTYKQ6XUX3 929 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 TMEM184AQ6ZMB5 413 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 EP400NLQ6ZTU2 488 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 TRAPPC11Q7Z392 1133 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 ZC3H3Q8IXZ2 948 aaKnown RBP14.62□□□□□ -0.07
COL1A1-208ENST00000494334 SENP8Q96LD8 212 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 CLSTN3Q9BQT9 956 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 CLEC1BQ9P126 229 aa14.62□□□□□ -0.07
COL1A1-208ENST00000494334 PCDHB8Q9UN66 801 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms