RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CDH2P19022 906 aaPredicted RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 ALCAMQ13740 583 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 IYDQ6PHW0 289 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 SYDE1Q6ZW31 735 aaPredicted RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 PHACTR1Q9C0D0 580 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 CEP44Q9C0F1 390 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 CYLDQ9NQC7 956 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 NSMCE4AQ9NXX6 385 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 SELENONQ9NZV5 590 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 ADAMTS1Q9UHI8 967 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 LRRIQ4A6NIV6 560 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 BTBD18B2RXH4 712 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 ERFP50548 548 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 SCNN1BP51168 640 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 OTUD4Q01804 1114 aaKnown RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 POLA2Q14181 598 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 C15orf59Q2T9L4 293 aaPredicted RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 ATAD3BQ5T9A4 648 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 INPP5DQ92835 1189 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 PAGE5Q96GU1 130 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 CHID1Q9BWS9 393 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 IARS2Q9NSE4 1012 aaKnown RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 DIP2BQ9P265 1576 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 TYW5A2RUC4 315 aaKnown RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 H7C0C1 242 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 PSAPP07602 524 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 ATP5OP48047 213 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 BPIFB4P59827 614 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 ANGPT1Q15389 498 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 TTBK2Q6IQ55 1244 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 TC2NQ8N9U0 490 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 CD163L1Q9NR16 1453 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 DGCR14Q96DF8 476 aaKnown RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 C19orf60Q96EN9 201 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 COX4I2Q96KJ9 171 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 UBE2OQ9C0C9 1292 aaKnown RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 GPC6Q9Y625 555 aaPredicted RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 A0A1B0GTH6 734 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 SPOPLQ6IQ16 392 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 PI16Q6UXB8 463 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 MDM1Q8TC05 714 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 MOV10Q9HCE1 1003 aaKnown RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 SMYD2Q9NRG4 433 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 RBM12Q9NTZ6 932 aaKnown RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 AMACRQ9UHK6 382 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 RIMS1Q86UR5 1692 aaKnown RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 VAV1P15498 845 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 FGFR4P22455 802 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 SOX6P35712 828 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 ITKQ08881 620 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 ITGADQ13349 1161 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 PRPSAP1Q14558 356 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 TRAPPC11Q7Z392 1133 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 SERPINB12Q96P63 405 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 KCND1Q9NSA2 647 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 VWA5AO00534 786 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 KRT73Q86Y46 540 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 CLVS1Q8IUQ0 354 aaPredicted RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 EFHD2Q96C19 240 aaPredicted RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 APOL4Q9BPW4 351 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 AURKCQ9UQB9 309 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 TELO2Q9Y4R8 837 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 TTC26A0AVF1 554 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 CHN2P52757 468 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 AP3B2Q13367 1082 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 KIF19Q2TAC6 998 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 ADSSL1Q8N142 457 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 BBS2Q9BXC9 721 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 SPEF1Q9Y4P9 236 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 FGAP02671 866 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 PROSER3Q2NL68 480 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 BBS5Q8N3I7 341 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 IPO11Q9UI26 975 aaKnown RBP13.94□□□□□ -0.18
USP40-208ENST00000450966 STOML2Q9UJZ1 356 aa13.94□□□□□ -0.18
USP40-208ENST00000450966 ZNF233A6NK53 670 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 COBLO75128 1261 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 CIITAP33076 1130 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 KRT20P35900 424 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 MXI1P50539 228 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 SREBF2Q12772 1141 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 NCAPHQ15003 741 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 PDCD4Q53EL6 469 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 RUNDC3AQ59EK9 446 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 ZC3H12BQ5HYM0 836 aaKnown RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 TTC27Q6P3X3 843 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 LRRC6Q86X45 466 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 DGKHQ86XP1 1220 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 EDEM3Q9BZQ6 932 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 GIN1Q9NXP7 522 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 STK39Q9UEW8 545 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 LARGE1O95461 756 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 PLOD1Q02809 727 aaPredicted RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 PTGDRQ13258 359 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 NR1D2Q14995 579 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 KCNV1Q6PIU1 500 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 MTHFD1LQ6UB35 978 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 GRAMD1CQ8IYS0 662 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 RMND5BQ96G75 393 aaPredicted RBP13.93□□□□□ -0.18
USP40-208ENST00000450966 KIF17Q9P2E2 1029 aa13.93□□□□□ -0.18
USP40-208ENST00000450966 RGS20O76081 388 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms