RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W THI74Q04083 370 aa0.86□□□□□ -2.27
SMC1YFL008W AIM33Q04516 312 aa0.86□□□□□ -2.27
SMC1YFL008W YLR297WQ05899 129 aa0.86□□□□□ -2.27
SMC1YFL008W BOP2Q06150 570 aa0.86□□□□□ -2.27
SMC1YFL008W SFH1Q06168 426 aa0.86□□□□□ -2.27
SMC1YFL008W SMD2Q06217 110 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W FRQ1Q06389 190 aa0.86□□□□□ -2.27
SMC1YFL008W YPR127WQ06494 345 aa0.86□□□□□ -2.27
SMC1YFL008W DCI1Q08558 271 aa0.86□□□□□ -2.27
SMC1YFL008W PEX27Q08580 376 aa0.86□□□□□ -2.27
SMC1YFL008W SPC3Q12133 184 aa0.86□□□□□ -2.27
SMC1YFL008W YCT1Q12235 531 aa0.86□□□□□ -2.27
SMC1YFL008W PAA1Q12447 191 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W YLR462WO13556 202 aa0.86□□□□□ -2.27
SMC1YFL008W COX5BP00425 151 aa0.86□□□□□ -2.27
SMC1YFL008W PIS1P06197 220 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W UGA1P17649 471 aa0.86□□□□□ -2.27
SMC1YFL008W DAL81P21657 970 aa0.86□□□□□ -2.27
SMC1YFL008W HYP2P23301 157 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W CLG1P35190 452 aa0.86□□□□□ -2.27
SMC1YFL008W HIS2P38635 335 aa0.86□□□□□ -2.27
SMC1YFL008W YHL049CP38722 271 aa0.86□□□□□ -2.27
SMC1YFL008W IPI1P38803 334 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W AIM18P38884 321 aa0.86□□□□□ -2.27
SMC1YFL008W SEC72P39742 193 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W YEL075CP39972 122 aa0.86□□□□□ -2.27
SMC1YFL008W YER189WP40104 122 aa0.86□□□□□ -2.27
SMC1YFL008W MMF1P40185 145 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W SMX2P40204 77 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W YIL029CP40538 142 aa0.86□□□□□ -2.27
SMC1YFL008W YIL012WP40551 113 aa0.86□□□□□ -2.27
SMC1YFL008W YFL064CP43540 174 aa0.86□□□□□ -2.27
SMC1YFL008W AGP3P43548 558 aa0.86□□□□□ -2.27
SMC1YFL008W TRM9P49957 279 aa0.86□□□□□ -2.27
SMC1YFL008W YGL262WP53054 175 aa0.86□□□□□ -2.27
SMC1YFL008W NOP19P53317 196 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W DBP6P53734 629 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W CUS2P53830 285 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W YNL146WP53906 100 aa0.86□□□□□ -2.27
SMC1YFL008W CTF19Q02732 369 aa0.86□□□□□ -2.27
SMC1YFL008W RUB1Q03919 77 aa0.86□□□□□ -2.27
SMC1YFL008W YMR244WQ04018 355 aa0.86□□□□□ -2.27
SMC1YFL008W HPT1Q04178 221 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W GIM5Q04493 163 aa0.86□□□□□ -2.27
SMC1YFL008W YMR315WQ04869 349 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W SHS1Q07657 551 aa0.86□□□□□ -2.27
SMC1YFL008W YLL007CQ07799 665 aa0.86□□□□□ -2.27
SMC1YFL008W HRD1Q08109 551 aa0.86□□□□□ -2.27
SMC1YFL008W YLR053CQ12026 108 aa0.86□□□□□ -2.27
SMC1YFL008W REX3Q12090 404 aa0.86□□□□□ -2.27
SMC1YFL008W MDY2Q12285 212 aa0.86□□□□□ -2.27
SMC1YFL008W YDL085C-AQ3E7B7 68 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W Q0144Q9ZZW2 109 aa0.86□□□□□ -2.27
SMC1YFL008W HTB1P02293 131 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W HTB2P02294 131 aa0.86□□□□□ -2.27
SMC1YFL008W RPL27AP0C2H6 136 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W RPL27BP0C2H7 136 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W RPB3P16370 318 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W SLM5P25345 492 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W PET18P25362 215 aa0.86□□□□□ -2.27
SMC1YFL008W MGT1P26188 188 aa0.86□□□□□ -2.27
SMC1YFL008W BUB2P26448 306 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W MSK1P32048 576 aa0.86□□□□□ -2.27
SMC1YFL008W LHP1P33399 275 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W GPX1P36014 167 aa0.86□□□□□ -2.27
SMC1YFL008W SHE2P36068 246 aaKnown RBP RIP-Chip data0.86□□□□□ -2.27not detected
SMC1YFL008W MRPL24P36525 258 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W CBP4P37267 147 aa0.86□□□□□ -2.27
SMC1YFL008W TRS20P38334 175 aa0.86□□□□□ -2.27
SMC1YFL008W GEP4P38812 185 aa0.86□□□□□ -2.27
SMC1YFL008W AST2P39945 430 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W KRE29P40026 464 aa0.86□□□□□ -2.27
SMC1YFL008W RPL10P41805 221 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W IGD1P43598 195 aa0.86□□□□□ -2.27
SMC1YFL008W BNA6P43619 295 aa0.86□□□□□ -2.27
SMC1YFL008W YAE1P47118 141 aaPredicted RBP0.86□□□□□ -2.27
SMC1YFL008W RPS12P48589 143 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W UFD1P53044 361 aa0.86□□□□□ -2.27
SMC1YFL008W USE1P53146 245 aa0.86□□□□□ -2.27
SMC1YFL008W CLD1P53264 445 aa0.86□□□□□ -2.27
SMC1YFL008W LSB1P53281 241 aa0.86□□□□□ -2.27
SMC1YFL008W SAY1P53324 424 aa0.86□□□□□ -2.27
SMC1YFL008W YNL010WP53981 241 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W CGI121Q03705 181 aaKnown RBP0.86□□□□□ -2.27
SMC1YFL008W TVP15Q03860 143 aa0.86□□□□□ -2.27
SMC1YFL008W FIT1Q04433 528 aa0.86□□□□□ -2.27
SMC1YFL008W PRM6Q04705 352 aa0.86□□□□□ -2.27
SMC1YFL008W TVP18Q04767 167 aa0.86□□□□□ -2.27
SMC1YFL008W COX20Q04935 205 aa0.86□□□□□ -2.27
SMC1YFL008W YFH1Q07540 174 aa0.86□□□□□ -2.27
SMC1YFL008W YOL131WQ08270 108 aa0.86□□□□□ -2.27
SMC1YFL008W AAD15Q08361 143 aa0.86□□□□□ -2.27
SMC1YFL008W AKR2Q12013 749 aa0.86□□□□□ -2.27
SMC1YFL008W CDC21P06785 304 aa0.85□□□□□ -2.27
SMC1YFL008W GAL7P08431 366 aa0.85□□□□□ -2.27
SMC1YFL008W RPS24AP0CX31 135 aaKnown RBP0.85□□□□□ -2.27
SMC1YFL008W RPS24BP0CX32 135 aaKnown RBP0.85□□□□□ -2.27
SMC1YFL008W SNF4P12904 322 aa0.85□□□□□ -2.27
SMC1YFL008W HOM6P31116 359 aaKnown RBP0.85□□□□□ -2.27
SMC1YFL008W GSP2P32836 220 aaKnown RBP0.85□□□□□ -2.27
Retrieved 100 of 5,963 RNA–protein pairs in 90.8 ms