RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ZNF233A6NK53 670 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 STMND1H3BQB6 276 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 CD19P15391 556 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 SLC12A3P55017 1021 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 TRIP13Q15645 432 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 CCDC6Q16204 474 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 BRDTQ58F21 947 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 HIBCHQ6NVY1 386 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 PALB2Q86YC2 1186 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ABHD8Q96I13 439 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 SATB2Q9UPW6 733 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 PCDHB4Q9Y5E5 795 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 USH1CQ9Y6N9 552 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 UBE4BO95155 1302 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 LRRIQ4A6NIV6 560 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 POLGP54098 1239 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 COX10Q12887 443 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 UAP1Q16222 522 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 ANKRD35Q8N283 1001 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 SLC35C1Q96A29 364 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 ZNF341Q9BYN7 854 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 AZI2Q9H6S1 392 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 STK32BQ9NY57 414 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 MOSPD1Q9UJG1 213 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 ALS2Q96Q42 1657 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 MYH2Q9UKX2 1941 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 PCP4L1A6NKN8 68 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 WDR64B1ANS9 1081 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 LCA5LO95447 670 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 FAPQ12884 760 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 MKRN4PQ13434 485 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 FYB2Q5VWT5 728 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 RNF207Q6ZRF8 634 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 ARHGEF18Q6ZSZ5 1173 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 PHLDB2Q86SQ0 1253 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 C11orf74Q86VG3 221 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 GMCL1Q96IK5 515 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 KCNMB3Q9NPA1 279 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 SEPT9Q9UHD8 586 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 BCS1LQ9Y276 419 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 DDTLA6NHG4 134 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 CYP26A1O43174 497 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 FOXD2O60548 495 aaPredicted RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 TNFRSF8P28908 595 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 HSPA9P38646 679 aaKnown RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 JAK3P52333 1124 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 HSD17B7P56937 341 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 IL9RQ01113 521 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 TAF12Q16514 161 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 ECM1Q16610 540 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 CYP4F22Q6NT55 531 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 JAMLQ86YT9 394 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 SCG3Q8WXD2 468 aaKnown RBP11.03□□□□□ -0.64
LIG1-220ENST00000601091 GLMNQ92990 594 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 TMBIM4Q9HC24 238 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 DCAF16Q9NXF7 216 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 SERPINA10Q9UK55 444 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 STK38LQ9Y2H1 464 aa11.03□□□□□ -0.64
LIG1-220ENST00000601091 TBKBP1A7MCY6 615 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 FAM86B1E9PN63 330 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 GOLGA8TH3BQL2 631 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 FOXN3O00409 490 aaPredicted RBP11.02□□□□□ -0.64
LIG1-220ENST00000601091 INMTO95050 263 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 FAM86B2P0C5J1 330 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 ITGB3BPQ13352 177 aaPredicted RBP11.02□□□□□ -0.64
LIG1-220ENST00000601091 DRP2Q13474 957 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 SYCP2LQ5T4T6 812 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 MYCBPAPQ8TBZ2 947 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 GLG1Q92896 1179 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 MAELQ96JY0 434 aaKnown RBP11.02□□□□□ -0.64
LIG1-220ENST00000601091 UROC1Q96N76 676 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 RMDN3Q96TC7 470 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 RIT2Q99578 217 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 THAP2Q9H0W7 228 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 TRPV5Q9NQA5 729 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 HSPBP1Q9NZL4 362 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 MKL2Q9ULH7 1088 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 SCINQ9Y6U3 715 aa11.02□□□□□ -0.64
LIG1-220ENST00000601091 DENND3A2RUS2 1198 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 PHF2O75151 1096 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 SKOR1P84550 965 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 TTMPQ5BVD1 217 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 ZNF720Q7Z2F6 126 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 CDAN1Q8IWY9 1227 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 PPP1R14CQ8TAE6 165 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 CYP2W1Q8TAV3 490 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 CYFIP2Q96F07 1278 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 OSGEPQ9NPF4 335 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 DNAJC17Q9NVM6 304 aaKnown RBP11.02□□□□□ -0.65
LIG1-220ENST00000601091 TUBGCP4Q9UGJ1 667 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 A0A0B4J203 849 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 AP3B1O00203 1094 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 MGEA5O60502 916 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 CASP5P51878 434 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 ERVK-9P63128 1117 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 KRT76Q01546 638 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 DYNC1I2Q13409 638 aaKnown RBP11.02□□□□□ -0.65
LIG1-220ENST00000601091 BBS9Q3SYG4 887 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 FAM133BQ5BKY9 247 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms