RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SCARA3Q6AZY7 606 aa32.94■■■□□ 2.86
CTCF-203ENST00000566078 C1orf127Q8N9H9 656 aa32.94■■■□□ 2.86
CTCF-203ENST00000566078 SYN2Q92777 582 aaPredicted RBP32.94■■■□□ 2.86
CTCF-203ENST00000566078 TRAIPQ9BWF2 469 aa32.94■■■□□ 2.86
CTCF-203ENST00000566078 SCN1AP35498 2009 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 SOWAHDA6NJG2 315 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 ARHGAP6O43182 974 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 NBNO60934 754 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 CST3P01034 146 aaPredicted RBP32.93■■■□□ 2.86
CTCF-203ENST00000566078 ITGA4P13612 1032 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 DRAP1Q14919 205 aaPredicted RBP32.93■■■□□ 2.86
CTCF-203ENST00000566078 GLRA4Q5JXX5 417 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 SPOPLQ6IQ16 392 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 NECAB2Q7Z6G3 386 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 TMTC1Q8IUR5 882 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 HELQQ8TDG4 1101 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 TATDN2Q93075 761 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 ZMAT2Q96NC0 199 aaKnown RBP32.93■■■□□ 2.86
CTCF-203ENST00000566078 IMPG2Q9BZV3 1241 aa32.93■■■□□ 2.86
CTCF-203ENST00000566078 F8VZ95 297 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 KRT19P08727 400 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 TMEM130Q8N3G9 435 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 KAT5Q92993 513 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 CHP1Q99653 195 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 PPP1R12CQ9BZL4 782 aa32.92■■■□□ 2.86
CTCF-203ENST00000566078 ITGB3P05106 788 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 GUCY2FP51841 1108 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 MYL6P60660 151 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 NOP14P78316 857 aaKnown RBP32.91■■■□□ 2.86
CTCF-203ENST00000566078 ASIC2Q16515 512 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 LRRC26Q2I0M4 334 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 GPR88Q9GZN0 384 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 SIX4Q9UIU6 781 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 PNMA6AP0CW24 399 aaPredicted RBP32.91■■■□□ 2.86
CTCF-203ENST00000566078 STAT1P42224 750 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 MFAP3P55082 362 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 XKR4Q5GH76 650 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 LPPQ93052 612 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 KREMEN1Q96MU8 473 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 APOBEC3GQ9HC16 384 aaKnown RBP32.91■■■□□ 2.86
CTCF-203ENST00000566078 RNF19AQ9NV58 838 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 DPP3Q9NY33 737 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 AIPL1Q9NZN9 384 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 ITGA11Q9UKX5 1188 aa32.91■■■□□ 2.86
CTCF-203ENST00000566078 MICAL3Q7RTP6 2002 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 ALPK3Q96L96 1907 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 MEIS3P2A8K0S8 358 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 ASS1P00966 412 aaKnown RBP32.9■■■□□ 2.86
CTCF-203ENST00000566078 IBSPP21815 317 aaPredicted RBP32.9■■■□□ 2.86
CTCF-203ENST00000566078 MSNP26038 577 aaKnown RBP32.9■■■□□ 2.86
CTCF-203ENST00000566078 ARID5AQ03989 594 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 GPNMBQ14956 572 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 MRPL10Q7Z7H8 261 aaKnown RBP32.9■■■□□ 2.86
CTCF-203ENST00000566078 RGS18Q9NS28 235 aa32.9■■■□□ 2.86
CTCF-203ENST00000566078 A0A0U1RQF3 1178 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 SMIM28A0A1B0GU29 152 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 ZNF623O75123 536 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 SKIP12755 728 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 KCNE1P15382 129 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 SOX5P35711 763 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 CDK17Q00537 523 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 GCNT1Q02742 428 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 MTF1Q14872 753 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 SGSM1Q2NKQ1 1148 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 ZNF699Q32M78 642 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 SCLYQ96I15 445 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 WNT8AQ9H1J5 351 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 TUBGCP4Q9UGJ1 667 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 TBX21Q9UL17 535 aa32.89■■■□□ 2.86
CTCF-203ENST00000566078 CLTBP09497 229 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 CCL23P55773 120 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 RAD9BQ6WBX8 426 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 RNF169Q8NCN4 708 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 BEST2Q8NFU1 509 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 CXorf38Q8TB03 319 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 LINC01599Q8WXQ3 324 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 FAM81BQ96LP2 452 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 TSPAN18Q96SJ8 248 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 FTHL17Q9BXU8 183 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 NUB1Q9Y5A7 615 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 GFPT2O94808 682 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 POLR2BP30876 1174 aaKnown RBP32.88■■■□□ 2.85
CTCF-203ENST00000566078 CYP2C18P33260 490 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 ZBTB6Q15916 424 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 PLEKHG4Q58EX7 1191 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 C18orf25Q96B23 403 aaPredicted RBP32.88■■■□□ 2.85
CTCF-203ENST00000566078 TMEM39AQ9NV64 488 aa32.88■■■□□ 2.85
CTCF-203ENST00000566078 UBQLN1Q9UMX0 589 aaKnown RBP32.88■■■□□ 2.85
CTCF-203ENST00000566078 PLEKP08567 350 aaPredicted RBP32.87■■■□□ 2.85
CTCF-203ENST00000566078 ATF7P17544 494 aaPredicted RBP32.87■■■□□ 2.85
CTCF-203ENST00000566078 MLH1P40692 756 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 TDRD12Q587J7 1177 aaKnown RBP32.87■■■□□ 2.85
CTCF-203ENST00000566078 HGSNATQ68CP4 663 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 AGMOQ6ZNB7 445 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 ENOSF1Q7L5Y1 443 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 KIAA1524Q8TCG1 905 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 PGBD4Q96DM1 585 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 ZFP42Q96MM3 310 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 XYLT2Q9H1B5 865 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 ARHGAP20Q9P2F6 1191 aa32.87■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms