RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CLCNKBP51801 687 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 GUCY2FP51841 1108 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 TFAMQ00059 246 aaKnown RBP23.47■■□□□ 1.35
SNX1-206ENST00000559389 PLCB3Q01970 1234 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 ENPEPQ07075 957 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 UPP1Q16831 310 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 C11orf57Q6ZUT1 292 aaPredicted RBP23.47■■□□□ 1.35
SNX1-206ENST00000559389 INTS8Q75QN2 995 aaKnown RBP23.47■■□□□ 1.35
SNX1-206ENST00000559389 TMEM130Q8N3G9 435 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 TMC2Q8TDI7 906 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 GDPD5Q8WTR4 605 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 RABGGTAQ92696 567 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 BORCS6Q96GS4 357 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 FAM84AQ96KN4 292 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 FNBP1Q96RU3 617 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 FUCA2Q9BTY2 467 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 INTS13Q9NVM9 706 aa23.47■■□□□ 1.35
SNX1-206ENST00000559389 SYCE3A1L190 88 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 LRRIQ3A6PVS8 624 aaPredicted RBP23.46■■□□□ 1.35
SNX1-206ENST00000559389 PODXLO00592 558 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 TMEM191BP0C7N4 346 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 DLATP10515 647 aaKnown RBP23.46■■□□□ 1.35
SNX1-206ENST00000559389 RPL9P32969 192 aaKnown RBP23.46■■□□□ 1.35
SNX1-206ENST00000559389 CLDN10P78369 228 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 GPM6BQ13491 265 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 LMBRD2Q68DH5 695 aaPredicted RBP23.46■■□□□ 1.35
SNX1-206ENST00000559389 OR5B17Q8NGF7 314 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 PARD3BQ8TEW8 1205 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 TMEM169Q96HH4 297 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 COLEC11Q9BWP8 271 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 MTMR12Q9C0I1 747 aa23.46■■□□□ 1.35
SNX1-206ENST00000559389 VAMP7P51809 220 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 MCCD1P59942 119 aaPredicted RBP23.45■■□□□ 1.34
SNX1-206ENST00000559389 BFSP1Q12934 665 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 GRIN2CQ14957 1233 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 ZSCAN23Q3MJ62 389 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 C1orf127Q8N9H9 656 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 C3orf58Q8NDZ4 430 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 CACTINQ8WUQ7 758 aaKnown RBP23.45■■□□□ 1.34
SNX1-206ENST00000559389 ANKRD36BP1Q96IX9 119 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 PRDM12Q9H4Q4 367 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 ADAM28Q9UKQ2 775 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 LZTS1Q9Y250 596 aa23.45■■□□□ 1.34
SNX1-206ENST00000559389 ATG2AQ2TAZ0 1938 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 ANO9A1A5B4 782 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 TULP1O00294 542 aaPredicted RBP23.44■■□□□ 1.34
SNX1-206ENST00000559389 GRM6O15303 877 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 LPXNO60711 386 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 B3GAT3O94766 335 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 EFEMP2O95967 443 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 CCDC192P0DO97 292 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 KRT13P13646 458 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 DLG4P78352 724 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 UBE3AQ05086 875 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 C1orf220Q5T0J3 134 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 DCLRE1AQ6PJP8 1040 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 CD300LGQ6UXG3 332 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 Q7L0L9 218 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 FILIP1Q7Z7B0 1213 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 RNF168Q8IYW5 571 aaPredicted RBP23.44■■□□□ 1.34
SNX1-206ENST00000559389 HASPINQ8TF76 798 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 FAM161BQ96MY7 647 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 POP1Q99575 1024 aaKnown RBP23.44■■□□□ 1.34
SNX1-206ENST00000559389 VN1R3Q9BXE9 311 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 DNAJC25Q9H1X3 360 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 ALG13Q9NP73 1137 aaKnown RBP23.44■■□□□ 1.34
SNX1-206ENST00000559389 DPP3Q9NY33 737 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 ITGA11Q9UKX5 1188 aa23.44■■□□□ 1.34
SNX1-206ENST00000559389 RFXAPO00287 272 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 TNNC2P02585 160 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 TNNI1P19237 187 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 DUOXA2Q1HG44 320 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 C9orf57Q5W0N0 161 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 FUT10Q6P4F1 479 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 USP37Q86T82 979 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 CXorf38Q8TB03 319 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 SPPL3Q8TCT6 385 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 SRRTQ9BXP5 876 aaKnown RBP23.43■■□□□ 1.34
SNX1-206ENST00000559389 LMAN2LQ9H0V9 348 aa23.43■■□□□ 1.34
SNX1-206ENST00000559389 SF3B1O75533 1304 aaKnown RBP eCLIP23.42■■□□□ 1.344e-7■■■■■ 86.2
SNX1-206ENST00000559389 PIRO00625 290 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 PPEF2O14830 753 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 FGFR1OPO95684 399 aaKnown RBP23.42■■□□□ 1.34
SNX1-206ENST00000559389 TRIM49P0CI25 452 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 TRIM49CP0CI26 452 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 IGFBP6P24592 240 aaPredicted RBP23.42■■□□□ 1.34
SNX1-206ENST00000559389 KRT17Q04695 432 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 DDX53Q86TM3 631 aaKnown RBP23.42■■□□□ 1.34
SNX1-206ENST00000559389 POF1BQ8WVV4 589 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 ZNF516Q92618 1163 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 METTL14Q9HCE5 456 aaKnown RBP23.42■■□□□ 1.34
SNX1-206ENST00000559389 ARMCX3Q9UH62 379 aaPredicted RBP23.42■■□□□ 1.34
SNX1-206ENST00000559389 SIX4Q9UIU6 781 aa23.42■■□□□ 1.34
SNX1-206ENST00000559389 TADA2AO75478 443 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 GNA14O95837 355 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 ITGB3P05106 788 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 DNAJB1P25685 340 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 POLR2BP30876 1174 aaKnown RBP23.41■■□□□ 1.34
SNX1-206ENST00000559389 AP3M2P53677 418 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 MARSP56192 900 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms