RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 LRFN4Q6PJG9 635 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 FAM214BQ7L5A3 538 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 SPRED2Q7Z698 418 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 DEFB132Q7Z7B7 95 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 ZFPM1Q8IX07 1006 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 RNF10Q8N5U6 811 aaKnown RBP6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 MSANTD4Q8NCY6 345 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 SLC17A8Q8NDX2 589 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 HNRNPLLQ8WVV9 542 aaKnown RBP6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 JDP2Q8WYK2 163 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 LPAR1Q92633 364 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 DNAJC19Q96DA6 116 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 HEXIM2Q96MH2 286 aaKnown RBP6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 SPAG5Q96R06 1193 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 CHP1Q99653 195 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 PARD6BQ9BYG5 372 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 KRTAP4-2Q9BYR5 136 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 ZSWIM4Q9H7M6 989 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 VCPKMTQ9H867 229 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 PRDM10Q9NQV6 1147 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 AGPAT5Q9NUQ2 364 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 RNF19AQ9NV58 838 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 MAP3K20Q9NYL2 800 aaKnown RBP6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 TBC1D7Q9P0N9 293 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 RNF14Q9UBS8 474 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 ZNRF3Q9ULT6 936 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 SIK3Q9Y2K2 1263 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 FRMD4BQ9Y2L6 1034 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 HYOU1Q9Y4L1 999 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 PCDHA13Q9Y5I0 950 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 SNCAIPQ9Y6H5 919 aa6.41□□□□□ -1.38
ATPAF1-204ENST00000474020 MYH4Q9Y623 1939 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TMEM265A0A087WTH1 108 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CLRN2A0PK11 232 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 FRMD3A2A2Y4 597 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 ARHGEF35A5YM69 484 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 LRRC53A6NM62 1247 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 IGF2BP3O00425 579 aaKnown RBP eCLIP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 WDR46O15213 610 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 MSH4O15457 936 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 DKC1O60832 514 aaKnown RBP eCLIP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 N4BP1O75113 896 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 FLOT1O75955 427 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 VIL1P09327 827 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 RHOXF2BP0C7M4 288 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PRLRP16471 622 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 JUNBP17275 347 aaPredicted RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 HOXA13P31271 388 aaPredicted RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PSMC2P35998 433 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CAP2P40123 477 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 STAT3P40763 770 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 USP14P54578 494 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 SLC12A3P55017 1021 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 POLR2FP61218 127 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 HERVK_113P62684 666 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 DMTNQ08495 405 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 KLHL30Q0D2K2 578 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 BNIP3Q12983 259 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PPP2R5CQ13362 524 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 GIT2Q14161 759 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PLCL1Q15111 1095 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CCDC85BQ15834 202 aaPredicted RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 LONRF2Q1L5Z9 754 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 ZCWPW2Q504Y3 356 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CEP55Q53EZ4 464 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TCERG1LQ5VWI1 586 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PAPD7Q5XG87 772 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 GBP6Q6ZN66 633 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CYFIP1Q7L576 1253 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 NIPA1Q7RTP0 329 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TRAPPC11Q7Z392 1133 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 KCNK18Q7Z418 384 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 SFR1Q86XK3 245 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CATSPER3Q86XQ3 398 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 NPAS4Q8IUM7 802 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TPH2Q8IWU9 490 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 SPICE1Q8N0Z3 855 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 MYCT1Q8N699 235 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 LMBR1Q8WVP7 490 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TBC1D5Q92609 795 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TAF4BQ92750 862 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 HPS3Q969F9 1004 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 ASIC4Q96FT7 647 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PLPPR2Q96GM1 343 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PRMT6Q96LA8 375 aaPredicted RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 IWS1Q96ST2 819 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 RIT2Q99578 217 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 EIF2AK1Q9BQI3 630 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 RHOXF2Q9BQY4 288 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 ZNF577Q9BSK1 485 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TIPINQ9BVW5 301 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 BHMT2Q9H2M3 363 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 RANBP17Q9H2T7 1088 aaKnown RBP6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 PARVGQ9HBI0 331 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 OLFML3Q9NRN5 406 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 GTF2IRD1Q9UHL9 959 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 CCPG1Q9ULG6 757 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 ODF2LQ9ULJ1 636 aa6.4□□□□□ -1.38
ATPAF1-204ENST00000474020 TRAF3IP3Q9Y228 551 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms