RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C CDC10P25342 322 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C SCM4P32564 187 aa0.98□□□□□ -2.25
RTR1YER139C GDH2P33327 1092 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C PRP18P33411 251 aaPredicted RBP0.98□□□□□ -2.25
RTR1YER139C VPS21P36017 210 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C CBT1P36038 271 aaPredicted RBP0.98□□□□□ -2.25
RTR1YER139C MRX3P38172 270 aa0.98□□□□□ -2.25
RTR1YER139C YHR127WP38833 243 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C YRB1P41920 201 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C SNZ3P43545 298 aa0.98□□□□□ -2.25
RTR1YER139C ILM1P47155 203 aa0.98□□□□□ -2.25
RTR1YER139C COS6P53344 381 aa0.98□□□□□ -2.25
RTR1YER139C SNZ2P53824 298 aa0.98□□□□□ -2.25
RTR1YER139C CUS2P53830 285 aaPredicted RBP0.98□□□□□ -2.25
RTR1YER139C FYV6P53913 173 aa0.98□□□□□ -2.25
RTR1YER139C SWS2P53937 143 aa0.98□□□□□ -2.25
RTR1YER139C GOT1Q03554 138 aa0.98□□□□□ -2.25
RTR1YER139C CDC123Q05791 360 aa0.98□□□□□ -2.25
RTR1YER139C DCR2Q05924 578 aa0.98□□□□□ -2.25
RTR1YER139C RRP40Q08285 240 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C CSM4Q08955 156 aa0.98□□□□□ -2.25
RTR1YER139C GET4Q12125 312 aa0.98□□□□□ -2.25
RTR1YER139C YLR126CQ12288 251 aa0.98□□□□□ -2.25
RTR1YER139C ADF1Q2V2Q1 113 aa0.98□□□□□ -2.25
RTR1YER139C YBL008W-AQ3E821 79 aa0.98□□□□□ -2.25
RTR1YER139C RAD9P14737 1309 aa0.97□□□□□ -2.25
RTR1YER139C IPP1P00817 287 aaKnown RBP0.97□□□□□ -2.25
RTR1YER139C ARG80P07249 177 aa0.97□□□□□ -2.25
RTR1YER139C YKR104WP0CE69 306 aa0.97□□□□□ -2.25
RTR1YER139C MATALPHA2P0CY08 210 aa0.97□□□□□ -2.25
RTR1YER139C HMLALPHA2P0CY09 210 aa0.97□□□□□ -2.25
RTR1YER139C HOM6P31116 359 aaKnown RBP0.97□□□□□ -2.25
RTR1YER139C RIB1P38066 345 aa0.97□□□□□ -2.25
RTR1YER139C NRG2P38082 220 aa0.97□□□□□ -2.25
RTR1YER139C TRM5P38793 499 aa0.97□□□□□ -2.25
RTR1YER139C YHB1P39676 399 aaKnown RBP0.97□□□□□ -2.25
RTR1YER139C SMB1P40018 196 aaKnown RBP0.97□□□□□ -2.25
RTR1YER139C GLG2P47011 380 aa0.97□□□□□ -2.25
RTR1YER139C HOC1P47124 396 aa0.97□□□□□ -2.25
RTR1YER139C YJR079WP47126 109 aa0.97□□□□□ -2.25
RTR1YER139C RAD17P48581 401 aa0.97□□□□□ -2.25
RTR1YER139C HOP2P53187 214 aa0.97□□□□□ -2.25
RTR1YER139C DAD3P69850 94 aa0.97□□□□□ -2.25
RTR1YER139C PRM15Q03262 622 aa0.97□□□□□ -2.25
RTR1YER139C YMD8Q03697 442 aa0.97□□□□□ -2.25
RTR1YER139C YML108WQ03759 105 aa0.97□□□□□ -2.25
RTR1YER139C PEX12Q04370 399 aa0.97□□□□□ -2.25
RTR1YER139C YDR124WQ04608 324 aa0.97□□□□□ -2.25
RTR1YER139C YPR172WQ06608 200 aa0.97□□□□□ -2.25
RTR1YER139C YPR011CQ12251 326 aa0.97□□□□□ -2.25
RTR1YER139C JLP1Q12358 412 aa0.97□□□□□ -2.25
RTR1YER139C YHR086W-AQ3E746 53 aa0.97□□□□□ -2.25
RTR1YER139C NCB2Q92317 146 aa0.97□□□□□ -2.25
RTR1YER139C COX5AP00424 153 aa0.96□□□□□ -2.26
RTR1YER139C HTB1P02293 131 aaKnown RBP0.96□□□□□ -2.26
RTR1YER139C HTB2P02294 131 aa0.96□□□□□ -2.26
RTR1YER139C PUT1P09368 476 aa0.96□□□□□ -2.26
RTR1YER139C KSS1P14681 368 aa0.96□□□□□ -2.26
RTR1YER139C MGM101P32787 269 aaKnown RBP0.96□□□□□ -2.26
RTR1YER139C ERG28P40030 148 aa0.96□□□□□ -2.26
RTR1YER139C YNL194CP40169 301 aa0.96□□□□□ -2.26
RTR1YER139C YRB2P40517 327 aa0.96□□□□□ -2.26
RTR1YER139C OST2P46964 130 aa0.96□□□□□ -2.26
RTR1YER139C RPC17P47076 161 aa0.96□□□□□ -2.26
RTR1YER139C TRM9P49957 279 aa0.96□□□□□ -2.26
RTR1YER139C GET1P53192 235 aa0.96□□□□□ -2.26
RTR1YER139C CAB4P53332 305 aa0.96□□□□□ -2.26
RTR1YER139C CTF19Q02732 369 aa0.96□□□□□ -2.26
RTR1YER139C GRX3Q03835 250 aa0.96□□□□□ -2.26
RTR1YER139C EMI1Q04406 187 aa0.96□□□□□ -2.26
RTR1YER139C SPG4Q04438 115 aa0.96□□□□□ -2.26
RTR1YER139C MDM32Q12171 622 aa0.96□□□□□ -2.26
RTR1YER139C BOL1Q3E793 110 aa0.96□□□□□ -2.26
RTR1YER139C SAS5Q99314 248 aa0.96□□□□□ -2.26
RTR1YER139C SIR4P11978 1358 aa0.96□□□□□ -2.26
RTR1YER139C CDC33P07260 213 aaKnown RBP0.95□□□□□ -2.26
RTR1YER139C URA6P15700 204 aa0.95□□□□□ -2.26
RTR1YER139C YCR102CP25608 368 aa0.95□□□□□ -2.26
RTR1YER139C ECM13P38195 257 aa0.95□□□□□ -2.26
RTR1YER139C GRE3P38715 327 aaKnown RBP RIP-Chip data0.95□□□□□ -2.26not detected
RTR1YER139C COS8P38723 381 aa0.95□□□□□ -2.26
RTR1YER139C GOS1P38736 223 aa0.95□□□□□ -2.26
RTR1YER139C YIL001WP40560 513 aa0.95□□□□□ -2.26
RTR1YER139C ADO1P47143 340 aaKnown RBP0.95□□□□□ -2.26
RTR1YER139C JHD2P47156 728 aaPredicted RBP0.95□□□□□ -2.26
RTR1YER139C NUP57P48837 541 aa0.95□□□□□ -2.26
RTR1YER139C GTR2P53290 341 aa0.95□□□□□ -2.26
RTR1YER139C YMR279CQ03263 540 aa0.95□□□□□ -2.26
RTR1YER139C YLR179CQ06252 201 aaKnown RBP0.95□□□□□ -2.26
RTR1YER139C COQ10Q08058 207 aa0.95□□□□□ -2.26
RTR1YER139C SYC1Q08553 188 aaPredicted RBP0.95□□□□□ -2.26
RTR1YER139C YPL257WQ08974 193 aa0.95□□□□□ -2.26
RTR1YER139C GPM2Q12008 311 aa0.95□□□□□ -2.26
RTR1YER139C ADH3P07246 375 aaKnown RBP0.94□□□□□ -2.26
RTR1YER139C BCY1P07278 416 aaKnown RBP0.94□□□□□ -2.26
RTR1YER139C YPK2P18961 677 aa0.94□□□□□ -2.26
RTR1YER139C RPS5P26783 225 aaKnown RBP0.94□□□□□ -2.26
RTR1YER139C VMA11P32842 164 aa0.94□□□□□ -2.26
RTR1YER139C YPT52P36018 234 aaKnown RBP0.94□□□□□ -2.26
RTR1YER139C YOR062CP36025 268 aa0.94□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms