RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CCDC63Q8NA47 563 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 PCDHGC5Q9Y5F6 944 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 TUBGCP6Q96RT7 1819 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 RASA4O43374 803 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 RPS6KA5O75582 802 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 RAD17O75943 681 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 IFNB1P01574 187 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 ASNSP08243 561 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 YY1P25490 414 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 ATP11AP98196 1134 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 BYSLQ13895 437 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 CCDC137Q6PK04 289 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 UNC5DQ6UXZ4 953 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 HVCN1Q96D96 273 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 CDHR1Q96JP9 859 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 TRIM51Q9BSJ1 452 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 WNT8AQ9H1J5 351 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 FANCFQ9NPI8 374 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 DDX4Q9NQI0 724 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 CNOT8Q9UFF9 292 aaKnown RBP11.06□□□□□ -0.64
LIG1-220ENST00000601091 ANAPC5Q9UJX4 755 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 ZNF148Q9UQR1 794 aa11.06□□□□□ -0.64
LIG1-220ENST00000601091 A0A1B0GVG6 124 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 M0R2N6 131 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 NKRFO15226 690 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIG1-220ENST00000601091 RBP3P10745 1247 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 SLC8A1P32418 973 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 TNFAIP1Q13829 316 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 CCDC89Q8N998 374 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 CELF4Q9BZC1 486 aaKnown RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 CARD9Q9H257 536 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 VPS37BQ9H9H4 285 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 RAB20Q9NX57 234 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 ROBO3Q96MS0 1386 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 SLC16A4O15374 487 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 FAM107AO95990 144 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 TM4SF1P30408 202 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 LMNB2Q03252 620 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 MTMR1Q13613 665 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 MYBPC3Q14896 1274 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 HAUS6Q7Z4H7 955 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 ZNF564Q8TBZ8 553 aaPredicted RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 TBC1D22BQ9NU19 505 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 FEM1BQ9UK73 627 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 ALG6Q9Y672 507 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 GTPBP10A4D1E9 387 aaKnown RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 AGPSO00116 658 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 STAM2O75886 525 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 FAM153BP0C7A2 387 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 TMOD1P28289 359 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 CENPAP49450 140 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 PTGISQ16647 500 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 MUM1Q2TAK8 710 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 FAM153CQ494X1 144 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 SLC44A4Q53GD3 710 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 AGBL2Q5U5Z8 902 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 NCCRP1Q6ZVX7 275 aaPredicted RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 LDHDQ86WU2 507 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 PURBQ96QR8 312 aaKnown RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 ERP44Q9BS26 406 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 CCSER2Q9H7U1 834 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 A1CFQ9NQ94 594 aaKnown RBP11.05□□□□□ -0.64
LIG1-220ENST00000601091 FAM153AQ9UHL3 310 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 GGT7Q9UJ14 662 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 ZNF711Q9Y462 761 aa11.05□□□□□ -0.64
LIG1-220ENST00000601091 TRIM43BA6NCK2 446 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 NDC80O14777 642 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ENTPD3O75355 529 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ACSL3O95573 720 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 GGPS1O95749 300 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 KRT10P13645 584 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ATF7P17544 494 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 CHKAP35790 457 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 NPEPPSP55786 919 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 KRT39Q6A163 491 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 GATAD2AQ86YP4 633 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ASIC4Q96FT7 647 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 CHMP6Q96FZ7 201 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ZDHHC15Q96MV8 337 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ELAC2Q9BQ52 826 aaKnown RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 NUP85Q9BW27 656 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 MRPL47Q9HD33 250 aaKnown RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 GDF3Q9NR23 364 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 AGPAT3Q9NRZ7 376 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ZNF180Q9UJW8 692 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ANAPC7Q9UJX3 599 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 CD2APQ9Y5K6 639 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 TRPM3Q9HCF6 1732 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 A0A0A6YYK5 440 aaPredicted RBP11.04□□□□□ -0.64
LIG1-220ENST00000601091 PRSS47A8MTI9 375 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 CES2O00748 559 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 KLC1Q07866 573 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 C9orf131Q5VYM1 1079 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 PPP4R4Q6NUP7 873 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 PTF1AQ7RTS3 328 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 P3H4Q92791 437 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 ABCG4Q9H172 646 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 OLFML3Q9NRN5 406 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 KRT82Q9NSB4 513 aa11.04□□□□□ -0.64
LIG1-220ENST00000601091 LAMB4A4D0S4 1761 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms