RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 APBB1IPQ7Z5R6 666 aaPredicted RBP16.31■□□□□ 0.2
TRIM28-207ENST00000597136 KLHL23Q8NBE8 558 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 SAAL1Q96ER3 474 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 ZMAT2Q96NC0 199 aaKnown RBP16.31■□□□□ 0.2
TRIM28-207ENST00000597136 TSG101Q99816 390 aa16.31■□□□□ 0.2
TRIM28-207ENST00000597136 MRPL9Q9BYD2 267 aaKnown RBP16.31■□□□□ 0.2
TRIM28-207ENST00000597136 AGO2Q9UKV8 859 aaKnown RBP16.31■□□□□ 0.2
TRIM28-207ENST00000597136 SMTNL1A8MU46 457 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 BECN2A8MW95 431 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 C5orf67F2Z3F1 127 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 GRM6O15303 877 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 CALUO43852 315 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 ITGB1P05556 798 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 IGFBP6P24592 240 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 DNAJB1P25685 340 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SLC11A1P49279 550 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SNRPFP62306 86 aaKnown RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 GPM6BQ13491 265 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 ENOX2Q16206 610 aaKnown RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 EDRF1Q3B7T1 1238 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 XKR4Q5GH76 650 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SLFN12LQ6IEE8 588 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 TMEM173Q86WV6 379 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 COLGALT2Q8IYK4 626 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 GOLGA5Q8TBA6 731 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 PAAF1Q9BRP4 392 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 AGPAT3Q9NRZ7 376 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 CGNQ9P2M7 1197 aaKnown RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 KANSL3Q9P2N6 904 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 CPSF3Q9UKF6 684 aaKnown RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 NFE2L3Q9Y4A8 694 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SMIM28A0A1B0GU29 152 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 LACTBL1A8MY62 500 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 F8W810 466 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 H3BNC9 293 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 GALTP07902 379 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 CLTAP09496 248 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 DSC1Q08554 894 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 CSGALNACT2Q8N6G5 542 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 BCL7CQ8WUZ0 217 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SNX27Q96L92 541 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 SAMD11Q96NU1 681 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 RPS6KC1Q96S38 1066 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 PCDHB12Q9Y5F1 795 aa16.3■□□□□ 0.2
TRIM28-207ENST00000597136 TTC26A0AVF1 554 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 CSPG5O95196 566 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 RB1P06400 928 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 THP07101 528 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 LAG3P18627 525 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 GARTP22102 1010 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 YARSP54577 528 aaKnown RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 WNT7BP56706 349 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 FKBP3Q00688 224 aaKnown RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 SOX4Q06945 474 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 NFIL3Q16649 462 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 TPD52L1Q16890 204 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 ZC3H3Q8IXZ2 948 aaKnown RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 SPPL3Q8TCT6 385 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 NOC3LQ8WTT2 800 aaKnown RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 TMEM174Q8WUU8 243 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 FAM212AQ96EL1 285 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 EEF2KMTQ96G04 330 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 ZNF558Q96NG5 402 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 FAM193BQ96PV7 902 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 PPP1R10Q96QC0 940 aaKnown RBP16.29■□□□□ 0.2
TRIM28-207ENST00000597136 FAM213AQ9BRX8 229 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 HSD3B7Q9H2F3 369 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 GOLGA2P5Q9HBQ8 144 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 FANCLQ9NW38 375 aa16.29■□□□□ 0.2
TRIM28-207ENST00000597136 DOCK6Q96HP0 2047 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 NRP1O14786 923 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 FGF18O76093 207 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 NR3C1P04150 777 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 ALDH2P05091 517 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 ALDH7A1P49419 539 aaKnown RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 GRIK3Q13003 919 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 ADAM9Q13443 819 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 CAMK1Q14012 370 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 ARMCX5Q6P1M9 558 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 SLC9A9Q8IVB4 645 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 C12orf56Q8IXR9 622 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 C18orf25Q96B23 403 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 SRRTQ9BXP5 876 aaKnown RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 RPF1Q9H9Y2 349 aaKnown RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 AAASQ9NRG9 546 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 TOPORSQ9NS56 1045 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 SAMSN1Q9NSI8 373 aaKnown RBP16.28■□□□□ 0.2
TRIM28-207ENST00000597136 DMAC2Q9NW81 257 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 RWDD3Q9Y3V2 267 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 PLXNA3P51805 1871 aa16.28■□□□□ 0.2
TRIM28-207ENST00000597136 FSD2A1L4K1 749 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 CASTOR2A6NHX0 329 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 GOLGA6L19H0YKK7 550 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 ADRB2P07550 413 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 IGFBP4P22692 258 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 NR2F2P24468 414 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 RPL13P26373 211 aaKnown RBP16.27■□□□□ 0.2
TRIM28-207ENST00000597136 OR1G1P47890 313 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 MYBPC2Q14324 1141 aa16.27■□□□□ 0.2
TRIM28-207ENST00000597136 GSE1Q14687 1217 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms