RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZMAT2Q96NC0 199 aaKnown RBP17.69■□□□□ 0.42
TRIM28-206ENST00000595974 PYM1Q9BRP8 204 aaKnown RBP17.69■□□□□ 0.42
TRIM28-206ENST00000595974 S1PR5Q9H228 398 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 MRPL44Q9H9J2 332 aaKnown RBP17.69■□□□□ 0.42
TRIM28-206ENST00000595974 PLEKHA5Q9HAU0 1116 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 RXFP1Q9HBX9 757 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 FAM13BQ9NYF5 915 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 ATP6V1DQ9Y5K8 247 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-206ENST00000595974 C2orf16Q68DN1 1984 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 A0A0B4J269 797 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 MEFVO15553 781 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-206ENST00000595974 FAM189A1O60320 539 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 CXCL8P10145 99 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 EPCAMP16422 314 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 CLCN4P51793 760 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 AMPD3Q01432 767 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 ITIH3Q06033 890 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 UPP1Q16831 310 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 SLC10A6Q3KNW5 377 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 SEZ6Q53EL9 994 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 HERC4Q5GLZ8 1057 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-206ENST00000595974 SLC39A4Q6P5W5 647 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 DCLRE1AQ6PJP8 1040 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 DENND4AQ7Z401 1863 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 CCDC65Q8IXS2 484 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 GJD3Q8N144 294 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 DDX27Q96GQ7 796 aaKnown RBP17.68■□□□□ 0.42
TRIM28-206ENST00000595974 STRA6Q9BX79 667 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 GOLGA2P5Q9HBQ8 144 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 PANK4Q9NVE7 773 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 FNIP2Q9P278 1114 aa17.68■□□□□ 0.42
TRIM28-206ENST00000595974 TTC26A0AVF1 554 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 TEX28O15482 410 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 B3GAT3O94766 335 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 C1RP00736 705 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 SSTR3P32745 418 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 CLCNKBP51801 687 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 PPP2R3AQ06190 1150 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 SOX4Q06945 474 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 CBX2Q14781 532 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 L1TD1Q5T7N2 865 aaKnown RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 SLFN12LQ6IEE8 588 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 CNNM4Q6P4Q7 775 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 PDXDC1Q6P996 788 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 RIN2Q8WYP3 895 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-206ENST00000595974 PIK3R5Q8WYR1 880 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 B3GALT6Q96L58 329 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 FBXL18Q96ME1 805 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 TTPALQ9BTX7 342 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 MSTO1Q9BUK6 570 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 TRIM9Q9C026 710 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 EXOC7Q9UPT5 735 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 STYXL1Q9Y6J8 313 aa17.67■□□□□ 0.42
TRIM28-206ENST00000595974 C19orf67A6NJJ6 358 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 PODXLO00592 558 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 POLR2DO15514 142 aaKnown RBP17.66■□□□□ 0.42
TRIM28-206ENST00000595974 TRAPPC3O43617 180 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 GCNT3O95395 438 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 RPL9P32969 192 aaKnown RBP17.66■□□□□ 0.42
TRIM28-206ENST00000595974 TNFSF9P41273 254 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 RTP2Q5QGT7 225 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 FAM171A1Q5VUB5 890 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 CES5AQ6NT32 575 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 ELMSAN1Q6PJG2 1045 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 LEO1Q8WVC0 666 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-206ENST00000595974 STAMQ92783 540 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 SPATA32Q96LK8 384 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 ACCSQ96QU6 501 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 TSPAN18Q96SJ8 248 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 PHF7Q9BWX1 381 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-206ENST00000595974 ADAM7Q9H2U9 754 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 SFXN1Q9H9B4 322 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 RPF1Q9H9Y2 349 aaKnown RBP17.66■□□□□ 0.42
TRIM28-206ENST00000595974 CD320Q9NPF0 282 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 TBC1D7Q9P0N9 293 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 DPP7Q9UHL4 492 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 PCDHB13Q9Y5F0 798 aa17.66■□□□□ 0.42
TRIM28-206ENST00000595974 ANKRD63C9JTQ0 380 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 GLUD1P00367 558 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 ASIC1P78348 528 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 POSTNQ15063 836 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 ENOX2Q16206 610 aaKnown RBP17.65■□□□□ 0.42
TRIM28-206ENST00000595974 ADALQ6DHV7 355 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 STXBP4Q6ZWJ1 553 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 CD302Q8IX05 232 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 C3orf58Q8NDZ4 430 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 C18orf25Q96B23 403 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-206ENST00000595974 NECTIN4Q96NY8 510 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 APOL5Q9BWW9 433 aa17.65■□□□□ 0.42
TRIM28-206ENST00000595974 CPSF3Q9UKF6 684 aaKnown RBP17.65■□□□□ 0.42
TRIM28-206ENST00000595974 SPDYE4A6NLX3 237 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 XPOTO43592 962 aaKnown RBP17.64■□□□□ 0.41
TRIM28-206ENST00000595974 ADRB2P07550 413 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 MYBP10242 640 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 FGFR3P22607 806 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 MTHFRP42898 656 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 CASP5P51878 434 aa17.64■□□□□ 0.41
TRIM28-206ENST00000595974 POU5F1Q01860 360 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms