RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FAM189A1O60320 539 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 KIF20AO95235 890 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 KIF4AO95239 1232 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 IL18RAPO95256 599 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 CASP1P29466 404 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 RPL9P32969 192 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 TNFSF9P41273 254 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 SNRPFP62306 86 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 MRPS5P82675 430 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 COL19A1Q14993 1142 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 NAB2Q15742 525 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 ENOX2Q16206 610 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 DUSP6Q16828 381 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 SLC10A6Q3KNW5 377 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 USP41Q3LFD5 358 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 PDXDC1Q6P996 788 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 ELMSAN1Q6PJG2 1045 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 ADGRD2Q7Z7M1 963 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 PPFIBP1Q86W92 1011 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 EFHBQ8N7U6 833 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 IGFLR1Q9H665 355 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 CGNQ9P2M7 1197 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 CPSF3Q9UKF6 684 aaKnown RBP14.13□□□□□ -0.15
CLK3-224ENST00000568605 FAM50BQ9Y247 325 aa14.13□□□□□ -0.15
CLK3-224ENST00000568605 C2orf71A6NGG8 1288 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 TISP43B9A030 160 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 KINO60870 393 aaKnown RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 CXCL14O95715 111 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 RPN1P04843 607 aaKnown RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 KCNA5P22460 613 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 ACOT2P49753 483 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 KCNA1Q09470 495 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 PTPN14Q15678 1187 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 UPP1Q16831 310 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 BMT2Q1RMZ1 405 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 PUS10Q3MIT2 529 aaKnown RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 DCLRE1AQ6PJP8 1040 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 EPM2AIP1Q7L775 607 aaPredicted RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 RBM23Q86U06 439 aaKnown RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 NT5DC4Q86YG4 428 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 GPR65Q8IYL9 337 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 RNF168Q8IYW5 571 aaPredicted RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 FMR1NBQ8N0W7 255 aaPredicted RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 GPD1LQ8N335 351 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 MRPL43Q8N983 215 aaKnown RBP14.12□□□□□ -0.15
CLK3-224ENST00000568605 GOLGA5Q8TBA6 731 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 ZNF507Q8TCN5 953 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 HASPINQ8TF76 798 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 HPS3Q969F9 1004 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 KIF12Q96FN5 646 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 FGFBP2Q9BYJ0 223 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 ASB7Q9H672 318 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 SLC39A2Q9NP94 309 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLK3-224ENST00000568605 RMND1Q9NWS8 449 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 DERAQ9Y315 318 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 NUB1Q9Y5A7 615 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 PCDHGC5Q9Y5F6 944 aa14.12□□□□□ -0.15
CLK3-224ENST00000568605 HIDE1A8MVS5 230 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 PODXLO00592 558 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 B3GAT3O94766 335 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 ADH1AP07327 375 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CYP3A5P20815 502 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CLCNKBP51801 687 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 DSG1Q02413 1049 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 TMEM132DQ14C87 1099 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CTC1Q2NKJ3 1217 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 KMT5BQ4FZB7 885 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 TJAP1Q5JTD0 557 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 BEST2Q8NFU1 509 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 NOC3LQ8WTT2 800 aaKnown RBP14.11□□□□□ -0.15
CLK3-224ENST00000568605 SCFD1Q8WVM8 642 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CASP10Q92851 521 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 TIGD1Q96MW7 591 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 ZMAT2Q96NC0 199 aaKnown RBP14.11□□□□□ -0.15
CLK3-224ENST00000568605 PAAF1Q9BRP4 392 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 VN1R3Q9BXE9 311 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CXCL16Q9H2A7 254 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 GOLGA2P5Q9HBQ8 144 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 KIAA1586Q9HCI6 787 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 PRDM6Q9NQX0 595 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 CACNG4Q9UBN1 327 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 C2CD2Q9Y426 696 aa14.11□□□□□ -0.15
CLK3-224ENST00000568605 NCOR1O75376 2440 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 UNC80Q8N2C7 3258 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.1□□□□□ -0.15
CLK3-224ENST00000568605 LACTBL1A8MY62 500 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 C2CD2LO14523 706 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 KLRC4O43908 158 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 EXTL3O43909 919 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 TBX10O75333 385 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 SMC2O95347 1197 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 ADSSP30520 456 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 SOX4Q06945 474 aaPredicted RBP14.1□□□□□ -0.15
CLK3-224ENST00000568605 DPYDQ12882 1025 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 KCNB1Q14721 858 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 LEXMQ3ZCV2 418 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 ZBTB41Q5SVQ8 909 aa14.1□□□□□ -0.15
CLK3-224ENST00000568605 FAM171A1Q5VUB5 890 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms