RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 IPPQ9Y573 584 aa33.03■■■□□ 2.88
CTCF-203ENST00000566078 NFICP08651 508 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 MBTPS1Q14703 1052 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 TRIM60Q495X7 471 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 JADE1Q6IE81 842 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 IQCEQ6IPM2 695 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 PDXDC1Q6P996 788 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 TMEM139Q8IV31 216 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 ANKRD36BP1Q96IX9 119 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 TMX1Q9H3N1 280 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 PRDM10Q9NQV6 1147 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 UTP3Q9NQZ2 479 aaKnown RBP eCLIP33.02■■■□□ 2.883e-34■■■■■ 819.8
CTCF-203ENST00000566078 AJAP1Q9UKB5 411 aaPredicted RBP33.02■■■□□ 2.88
CTCF-203ENST00000566078 ZKSCAN5Q9Y2L8 839 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 LRRC53A6NM62 1247 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 PHACTR2O75167 634 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 VNN1O95497 513 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 HLA-DRAP01903 254 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 SKILP12757 684 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 ZSCAN20P17040 1043 aaPredicted RBP33.02■■■□□ 2.88
CTCF-203ENST00000566078 SMG8Q8ND04 991 aaKnown RBP33.02■■■□□ 2.88
CTCF-203ENST00000566078 SNX27Q96L92 541 aa33.02■■■□□ 2.88
CTCF-203ENST00000566078 RECQL4O94761 1208 aa33.01■■■□□ 2.87
CTCF-203ENST00000566078 TNNC2P02585 160 aa33.01■■■□□ 2.87
CTCF-203ENST00000566078 TSR1Q2NL82 804 aaKnown RBP33.01■■■□□ 2.87
CTCF-203ENST00000566078 CD302Q8IX05 232 aa33.01■■■□□ 2.87
CTCF-203ENST00000566078 MCOLN1Q9GZU1 580 aa33.01■■■□□ 2.87
CTCF-203ENST00000566078 C11orf49Q9H6J7 331 aa33.01■■■□□ 2.87
CTCF-203ENST00000566078 DCDC2CA8MYV0 355 aa33■■■□□ 2.87
CTCF-203ENST00000566078 AKAP5P24588 427 aa33■■■□□ 2.87
CTCF-203ENST00000566078 RAPGEF1Q13905 1077 aa33■■■□□ 2.87
CTCF-203ENST00000566078 C1orf53Q5VUE5 145 aa33■■■□□ 2.87
CTCF-203ENST00000566078 PHLDB3Q6NSJ2 640 aa33■■■□□ 2.87
CTCF-203ENST00000566078 TRAPPC11Q7Z392 1133 aa33■■■□□ 2.87
CTCF-203ENST00000566078 ARHGEF19Q8IW93 802 aa33■■■□□ 2.87
CTCF-203ENST00000566078 NAA15Q9BXJ9 866 aaKnown RBP33■■■□□ 2.87
CTCF-203ENST00000566078 FAM105AQ9NUU6 356 aa33■■■□□ 2.87
CTCF-203ENST00000566078 DNAJC12Q9UKB3 198 aa33■■■□□ 2.87
CTCF-203ENST00000566078 DAAM1Q9Y4D1 1078 aa33■■■□□ 2.87
CTCF-203ENST00000566078 PCDHB2Q9Y5E7 798 aa33■■■□□ 2.87
CTCF-203ENST00000566078 PITPNM1O00562 1244 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 TMEM132DQ14C87 1099 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 PAWRQ96IZ0 340 aaKnown RBP32.99■■■□□ 2.87
CTCF-203ENST00000566078 SPAG5Q96R06 1193 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 PLEKHA5Q9HAU0 1116 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 EIF2AK3Q9NZJ5 1116 aaKnown RBP32.99■■■□□ 2.87
CTCF-203ENST00000566078 PARP2Q9UGN5 583 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 MGEA5O60502 916 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 RFX1P22670 979 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 TLE2Q04725 743 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 TOX2Q96NM4 488 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 NT5C1BQ96P26 610 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 PI4K2AQ9BTU6 479 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 PYCARDQ9ULZ3 195 aa32.99■■■□□ 2.87
CTCF-203ENST00000566078 TDRD15B5MCY1 1934 aaKnown RBP32.98■■■□□ 2.87
CTCF-203ENST00000566078 FECHP22830 423 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 NCOA4Q13772 614 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 DSC3Q14574 896 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 NUCKS1Q9H1E3 243 aaKnown RBP32.98■■■□□ 2.87
CTCF-203ENST00000566078 RNF39Q9H2S5 420 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 ZNHIT6Q9NWK9 470 aaKnown RBP32.98■■■□□ 2.87
CTCF-203ENST00000566078 ATP11BQ9Y2G3 1177 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 C2CD2Q9Y426 696 aa32.98■■■□□ 2.87
CTCF-203ENST00000566078 ZC3H11AO75152 810 aaKnown RBP eCLIP32.97■■■□□ 2.87
CTCF-203ENST00000566078 FAAP100Q0VG06 881 aa32.97■■■□□ 2.87
CTCF-203ENST00000566078 E4F1Q66K89 784 aaPredicted RBP32.97■■■□□ 2.87
CTCF-203ENST00000566078 KIF12Q96FN5 646 aa32.97■■■□□ 2.87
CTCF-203ENST00000566078 IFIH1Q9BYX4 1025 aaKnown RBP32.97■■■□□ 2.87
CTCF-203ENST00000566078 CXCL16Q9H2A7 254 aa32.97■■■□□ 2.87
CTCF-203ENST00000566078 UBE2TQ9NPD8 197 aaPredicted RBP32.97■■■□□ 2.87
CTCF-203ENST00000566078 JAM2P57087 298 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 SFMBT2Q5VUG0 894 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 ZSCAN30Q86W11 494 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 NT5DC4Q86YG4 428 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 GPIHBP1Q8IV16 184 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 ELMO3Q96BJ8 720 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 C1orf112Q9NSG2 853 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 CNTN3Q9P232 1028 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 PLAGL2Q9UPG8 496 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 TET1Q8NFU7 2136 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 UMODL1Q5DID0 1318 aa32.96■■■□□ 2.87
CTCF-203ENST00000566078 CLSTN1O94985 981 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 MEA1Q16626 185 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 WDR44Q5JSH3 913 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 WDR59Q6PJI9 974 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 HACE1Q8IYU2 909 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 PPM1KQ8N3J5 372 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 ADAM2Q99965 735 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 HIPK3Q9H422 1215 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 KLK14Q9P0G3 267 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 MYO6Q9UM54 1294 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 DERAQ9Y315 318 aa32.95■■■□□ 2.87
CTCF-203ENST00000566078 CAPN2P17655 700 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 HNRNPH3P31942 346 aaKnown RBP32.95■■■□□ 2.86
CTCF-203ENST00000566078 RAB27AP51159 221 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 TRPC3Q13507 836 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 ALKAL1Q6UXT8 129 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 CYP26C1Q6V0L0 522 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 STK33Q9BYT3 514 aa32.95■■■□□ 2.86
CTCF-203ENST00000566078 ARHGAP44Q17R89 818 aa32.94■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms