RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DMP1Q13316 513 aaPredicted RBP18.79■□□□□ 0.6
CLN3-216ENST00000565316 UVSSAQ2YD98 709 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 PPM1LQ5SGD2 360 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 DTHD1Q6ZMT9 781 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 KCNK18Q7Z418 384 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 CEP120Q8N960 986 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 DTWD2Q8NBA8 298 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 DRC1Q96MC2 740 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 NTPCRQ9BSD7 190 aaKnown RBP18.79■□□□□ 0.6
CLN3-216ENST00000565316 MRPL4Q9BYD3 311 aaKnown RBP18.79■□□□□ 0.6
CLN3-216ENST00000565316 SLC2A4RGQ9NR83 387 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 CDH7Q9ULB5 785 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 VWA8A3KMH1 1905 aa18.79■□□□□ 0.6
CLN3-216ENST00000565316 TRAPPC3O43617 180 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 CDC25AP30304 524 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 NTHL1P78549 312 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 SOX4Q06945 474 aaPredicted RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 HYIQ5T013 277 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 RSPO2Q6UXX9 243 aaPredicted RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 KCTD17Q8N5Z5 321 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 C3orf58Q8NDZ4 430 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 DDX27Q96GQ7 796 aaKnown RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 TIPINQ9BVW5 301 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 CCDC94Q9BW85 323 aaPredicted RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 TARS2Q9BW92 718 aaKnown RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 GOLGA2P5Q9HBQ8 144 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 KMT5AQ9NQR1 393 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 TOPORSQ9NS56 1045 aaPredicted RBP18.78■□□□□ 0.6
CLN3-216ENST00000565316 NUMBLQ9Y6R0 609 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 SPTBN4Q9H254 2564 aa18.78■□□□□ 0.6
CLN3-216ENST00000565316 ZNF292O60281 2723 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 XYLBO75191 536 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 MCF2P10911 925 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 KCNE1P15382 129 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 GUCY2CP25092 1073 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 TKTP29401 623 aaKnown RBP18.77■□□□□ 0.6
CLN3-216ENST00000565316 YARSP54577 528 aaKnown RBP18.77■□□□□ 0.6
CLN3-216ENST00000565316 ATP2C1P98194 919 aaPredicted RBP18.77■□□□□ 0.6
CLN3-216ENST00000565316 RABEP1Q15276 862 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 ZNF568Q3ZCX4 644 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 RILPL1Q5EBL4 403 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 AXDND1Q5T1B0 1012 aaPredicted RBP18.77■□□□□ 0.6
CLN3-216ENST00000565316 PHLDB3Q6NSJ2 640 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 ANKS3Q6ZW76 656 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 SLC7A14Q8TBB6 771 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 SPIRE2Q8WWL2 714 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 SNX27Q96L92 541 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 ZMAT2Q96NC0 199 aaKnown RBP18.77■□□□□ 0.6
CLN3-216ENST00000565316 SLC38A7Q9NVC3 462 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 KIF3AQ9Y496 699 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 CDY1Q9Y6F8 540 aa18.77■□□□□ 0.6
CLN3-216ENST00000565316 FAM186AA6NE01 2351 aa18.77■□□□□ 0.59
CLN3-216ENST00000565316 GVINP1Q7Z2Y8 2422 aa18.77■□□□□ 0.59
CLN3-216ENST00000565316 PRR23AA6NEV1 266 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 CCL16O15467 120 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 MPZL3Q6UWV2 235 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 ASCL5Q7RTU5 278 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 GPR152Q8TDT2 470 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 FGF13Q92913 245 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 TBC1D17Q9HA65 648 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 CNTN3Q9P232 1028 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 KCNG1Q9UIX4 513 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 CA14Q9ULX7 337 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 DOCK6Q96HP0 2047 aa18.76■□□□□ 0.59
CLN3-216ENST00000565316 SLC16A4O15374 487 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 MEFVO15553 781 aaPredicted RBP18.75■□□□□ 0.59
CLN3-216ENST00000565316 TBC1D4O60343 1298 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 BRCC3P46736 316 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 OSTNP61366 133 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 ANGPT1Q15389 498 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 SLC8B1Q6J4K2 584 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 PARM1Q6UWI2 310 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 FRMD5Q7Z6J6 570 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 TMEM161BQ8NDZ6 487 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 ITFG1Q8TB96 612 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 FGF14Q92915 247 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 ACAP3Q96P50 834 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 PNMA5Q96PV4 448 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 RPP25Q9BUL9 199 aaKnown RBP18.75■□□□□ 0.59
CLN3-216ENST00000565316 ARHGEF3Q9NR81 526 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 KCNH3Q9ULD8 1083 aa18.75■□□□□ 0.59
CLN3-216ENST00000565316 SFI1A8K8P3 1242 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 I3L4J1 428 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 PODXLO00592 558 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 PLS3P13797 630 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 RPL9P32969 192 aaKnown RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 MCTP1Q6DN14 999 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 MTSS1LQ765P7 747 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 SYT2Q8N9I0 419 aaPredicted RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 TCHPQ9BT92 498 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 DNMT3BQ9UBC3 853 aaKnown RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 TRIP11Q15643 1979 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 ARHGEF37A1IGU5 675 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 STK25O00506 426 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 SYN3O14994 580 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 TOM1L1O75674 476 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 ABLIM3O94929 683 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 MAPTP10636 758 aaKnown RBP18.74■□□□□ 0.59
CLN3-216ENST00000565316 SLC12A3P55017 1021 aa18.74■□□□□ 0.59
CLN3-216ENST00000565316 MRPL58Q14197 206 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms