RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ECT2Q9H8V3 914 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 LY9Q9HBG7 655 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 MKL2Q9ULH7 1088 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 STAP1Q9ULZ2 295 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 TMCO1Q9UM00 188 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 POTEFA5A3E0 1075 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 POTEIP0CG38 1075 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ZBTB48P10074 688 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PSMA4P25789 261 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 POTEEQ6S8J3 1075 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 GPKOWQ92917 476 aaPredicted RBP eCLIP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ZFP91Q96JP5 570 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 SPACA7Q96KW9 195 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 MTG1Q9BT17 334 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 MAF1Q9H063 256 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 NOVA2Q9UNW9 492 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 C3P01024 1663 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 MTSS1O43312 755 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 EYA4O95677 639 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 KRT4P19013 534 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ACADSBP45954 432 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ATP1A2P50993 1020 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 HDLBPQ00341 1268 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ITKQ08881 620 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 UGP2Q16851 508 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ICE2Q659A1 982 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 TRIM68Q6AZZ1 485 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 CAPRIN2Q6IMN6 1127 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 STX19Q8N4C7 294 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 XXYLT1Q8NBI6 393 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 DDI1Q8WTU0 396 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 CFAP36Q96G28 342 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PAWRQ96IZ0 340 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 POLR3CQ9BUI4 534 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 GREM2Q9H772 168 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ATP8A1Q9Y2Q0 1164 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ARHGEF28Q8N1W1 1705 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 LRRIQ4A6NIV6 560 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 IGF2BP3O00425 579 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PALMO75781 387 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 APOEP02649 317 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 TXNP10599 105 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 CDK8P49336 464 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 EFTUD2Q15029 972 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 EPHA7Q15375 998 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 TIGD5Q53EQ6 642 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 CCDC92Q53HC0 331 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PPHLN1Q8NEY8 458 aaKnown RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 ZMYND8Q9ULU4 1186 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 NR2E1Q9Y466 385 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 C17orf102A2RUQ5 167 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 EIF3HO15372 352 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 CTNNB1P35222 781 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 RFC1P35251 1148 aaPredicted RBP8.25□□□□□ -1.09
VPS13D-211ENST00000543710 MYL6P60660 151 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PPATQ06203 517 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 P3H1Q32P28 736 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 PIGSQ96S52 555 aa8.25□□□□□ -1.09
VPS13D-211ENST00000543710 GPR182O15218 404 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PSTPIP1O43586 416 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RPS6KA5O75582 802 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 HOXB6P17509 224 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PPM1AP35813 382 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PLTPP55058 493 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RIPPLY1Q0D2K3 151 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PIGHQ14442 188 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ANO4Q32M45 955 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ARMC6Q6NXE6 501 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC69Q6ZNQ3 347 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 STKLD1Q8NE28 680 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF564Q8TBZ8 553 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SPDL1Q96EA4 605 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SAAL1Q96ER3 474 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SPATA33Q96N06 139 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 STRBPQ96SI9 672 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PRRX2Q99811 253 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 MRPL4Q9BYD3 311 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 KDM4CQ9H3R0 1056 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ANKFY1Q9P2R3 1169 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 DNAJC12Q9UKB3 198 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 VPS9D1Q9Y2B5 631 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 TECPR2O15040 1411 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 POC1B-GALNT4F8VUJ3 575 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 APOL1O14791 398 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 MAPTP10636 758 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 MCAMP43121 646 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 RNASE9P60153 205 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 TRIM28Q13263 835 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC24Q50LG9 513 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ALKBH5Q6P6C2 394 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 DEFB128Q7Z7B8 93 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 NOP9Q86U38 636 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ZMAT2Q96NC0 199 aaKnown RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 ASPSCR1Q9BZE9 553 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 KRCC1Q9NPI7 259 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-211ENST00000543710 BLOC1S6Q9UL45 172 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PCDHA6Q9UN73 950 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 PCDHA8Q9Y5H6 950 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 GYG2O15488 501 aa8.24□□□□□ -1.09
VPS13D-211ENST00000543710 SNX2O60749 519 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms