RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ADAM12	O43184	909 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	TRAPPC3	O43617	180 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	LRG1	P02750	347 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CPA1	P15085	419 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	GLRA2	P23416	452 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	FCAR	P24071	287 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	PSMA5	P28066	241 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	LIMK1	P53667	647 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	SHC2	P98077	582 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CYP4A11	Q02928	519 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	FAM187B	Q17R55	369 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	SLC5A9	Q2M3M2	681 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CPLX2	Q6PUV4	134 aa	Known RBP	13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	PRR23B	Q6ZRT6	265 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	ASAP3	Q8TDY4	903 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	DEPDC1B	Q8WUY9	529 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	HAS1	Q92839	578 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	MCRS1	Q96EZ8	462 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	UROC1	Q96N76	676 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	ADPGK	Q9BRR6	497 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	TRMT61B	Q9BVS5	477 aa	Known RBP	13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	PLA2G2F	Q9BZM2	168 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	NCOA5	Q9HCD5	579 aa	Known RBP	13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZFP14	Q9HCL3	533 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CACNG4	Q9UBN1	327 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	NDRG2	Q9UN36	371 aa	Known RBP	13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	CDY1	Q9Y6F8	540 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	VWA8	A3KMH1	1905 aa		13.74	□□□□□ -0.21
CAPN1-223	ENST00000533079	NOTCH4	Q99466	2003 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CPLX1	O14810	134 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	MARCH6	O60337	910 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CCNT1	O60563	726 aa	Known RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	RECQL4	O94761	1208 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	BAG4	O95429	457 aa	Known RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CEBPB	P17676	345 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	PTPN2	P17706	415 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	HSPA4	P34932	840 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CXCL12	P48061	93 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CCT2	P78371	535 aa	Known RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	SIM2	Q14190	667 aa	Predicted RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CTTN	Q14247	550 aa	Known RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	LRRC32	Q14392	662 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	PRSS36	Q5K4E3	855 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	TANGO2	Q6ICL3	276 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	SLC8B1	Q6J4K2	584 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	CDR2L	Q86X02	465 aa	Predicted RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZBTB8OS	Q8IWT0	167 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	TPH2	Q8IWU9	490 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	FAM3C	Q92520	227 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	ASB16	Q96NS5	453 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	C2orf40	Q9H1Z8	148 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZNF334	Q9HCZ1	680 aa	Predicted RBP	13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	SNX14	Q9Y5W7	946 aa		13.73	□□□□□ -0.21
CAPN1-223	ENST00000533079	TPR	P12270	2363 aa	Known RBP	13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	LRRIQ4	A6NIV6	560 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	CDC45	O75419	566 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	SLITRK3	O94933	977 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	XBP1	P17861	261 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	PSMC3	P17980	439 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	PML	P29590	882 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	RARRES1	P49788	294 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	LPAL2	Q16609	132 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	IL31	Q6EBC2	164 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	LONP2	Q86WA8	852 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	POTED	Q86YR6	584 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	MAP4K3	Q8IVH8	894 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	SPEM1	Q8N4L4	309 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	LEMD2	Q8NC56	503 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZNF461	Q8TAF7	563 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	FZD8	Q9H461	694 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	PDZD7	Q9H5P4	517 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	PIAS3	Q9Y6X2	628 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	CHD6	Q8TD26	2715 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	TICRR	Q7Z2Z1	1910 aa		13.72	□□□□□ -0.21
CAPN1-223	ENST00000533079	MAP1B	P46821	2468 aa	Known RBP	13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	PRRG1	O14668	218 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	ZBTB39	O15060	712 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	B3GAT3	O94766	335 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	ELF1	P32519	619 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	ROR1	Q01973	937 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	PTGDR	Q13258	359 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	GRM2	Q14416	872 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	DCAF4L1	Q3SXM0	396 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	FAM78A	Q5JUQ0	283 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	PDZD4	Q76G19	769 aa	Predicted RBP	13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	ELMOD1	Q8N336	334 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	MCPH1	Q8NEM0	835 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	SMARCD2	Q92925	531 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	E2F7	Q96AV8	911 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	DDX27	Q96GQ7	796 aa	Known RBP	13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	HSD17B14	Q9BPX1	270 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	LMAN1L	Q9HAT1	526 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	TRPV4	Q9HBA0	871 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	SNTG2	Q9NY99	539 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	MAFF	Q9ULX9	164 aa		13.71	□□□□□ -0.21
CAPN1-223	ENST00000533079	CHD8	Q9HCK8	2581 aa		13.71	□□□□□ -0.22
CAPN1-223	ENST00000533079	WDR27	A2RRH5	827 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms