RNA–Protein interactions for RNA: ENST00000407637.5

HERC3-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 1 (best) BASIC

Gene HERC3, Length 2,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-203ENST00000407637 C9orf72Q96LT7 481 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 ZSWIM1Q9BR11 485 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 EURLQ9NYK6 297 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 WHRNQ9P202 907 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 MYH11P35749 1972 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 DLATP10515 647 aaKnown RBP13.58□□□□□ -0.24
HERC3-203ENST00000407637 HOXD12P35452 270 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 ITGA8P53708 1063 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 CABP4P57796 275 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 MED21Q13503 144 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 DCTN2Q13561 401 aaKnown RBP13.58□□□□□ -0.24
HERC3-203ENST00000407637 ITGA9Q13797 1035 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 GRM2Q14416 872 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 RIPOR1Q6ZS17 1223 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 IRGQQ8WZA9 623 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 DNAJC19Q96DA6 116 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 ABHD8Q96I13 439 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 UNC45AQ9H3U1 944 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 EPB41L1Q9H4G0 881 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 MTMR7Q9Y216 660 aa13.58□□□□□ -0.24
HERC3-203ENST00000407637 BUD23O43709 281 aaKnown RBP13.57□□□□□ -0.24
HERC3-203ENST00000407637 ESRRAP11474 423 aaPredicted RBP13.57□□□□□ -0.24
HERC3-203ENST00000407637 NR2F2P24468 414 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 CYP1B1Q16678 543 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 ISLR2Q6UXK2 745 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 IFNL2Q8IZJ0 200 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SYT2Q8N9I0 419 aaPredicted RBP13.57□□□□□ -0.24
HERC3-203ENST00000407637 SNX29Q8TEQ0 813 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 MAML1Q92585 1016 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 PANX3Q96QZ0 392 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 PLA2G12BQ9BX93 195 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 KCTD10Q9H3F6 313 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 TRABDQ9H4I3 376 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 GCNT4Q9P109 453 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SUN2Q9UH99 717 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 TMEM98Q9Y2Y6 226 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 PCDH11YQ9BZA8 1340 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 MEGF6O75095 1541 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 MAGEB6P1A0A0J9YX57 407 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 BTBD19C9JJ37 291 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 ZBED4O75132 1171 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SMIM18P0DKX4 95 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 TROVE2P10155 538 aaKnown RBP eCLIP13.57□□□□□ -0.24
HERC3-203ENST00000407637 CA4P22748 312 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 MTTPP55157 894 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 AP2B1P63010 937 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 EPHA7Q15375 998 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SIX1Q15475 284 aaPredicted RBP13.57□□□□□ -0.24
HERC3-203ENST00000407637 MAPK6Q16659 721 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SLC35G1Q2M3R5 365 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 SFT2D3Q587I9 215 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 KLHL35Q6PF15 583 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 RNF207Q6ZRF8 634 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 PDSS2Q86YH6 399 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 ZNF75CPQ92670 426 aaPredicted RBP13.57□□□□□ -0.24
HERC3-203ENST00000407637 KCNN1Q92952 543 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 CLPTM1LQ96KA5 538 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 EMILIN3Q9NT22 766 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 MTUS1Q9ULD2 1270 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 TRAF3IP3Q9Y228 551 aa13.57□□□□□ -0.24
HERC3-203ENST00000407637 PRPF4O43172 522 aaKnown RBP eCLIP13.56□□□□□ -0.24
HERC3-203ENST00000407637 STK10O94804 968 aaKnown RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 RARBP10826 455 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 LMNB1P20700 586 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 FGFR2P21802 821 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 PIK3CAP42336 1068 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 DYNLL1P63167 89 aaKnown RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 ZBTB16Q05516 673 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 TBL3Q12788 808 aaKnown RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 DLG1Q12959 904 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 HNRNPDQ14103 355 aaKnown RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 NONOQ15233 471 aaKnown RBP eCLIP13.56□□□□□ -0.24
HERC3-203ENST00000407637 CCDC62Q6P9F0 684 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 C3orf67Q6ZVT6 689 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 NEK8Q86SG6 692 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 TTC7BQ86TV6 843 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 CPNE8Q86YQ8 564 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 SLC13A5Q86YT5 568 aaPredicted RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 SLC25A41Q8N5S1 370 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 FBXO27Q8NI29 283 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 SCFD1Q8WVM8 642 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 C1orf54Q8WWF1 131 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 PRICKLE1Q96MT3 831 aaPredicted RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 ADAM33Q9BZ11 813 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 NDUFA13Q9P0J0 144 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 ANKFY1Q9P2R3 1169 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 CHORDC1Q9UHD1 332 aaPredicted RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 WDR91A4D1P6 747 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 GGPS1O95749 300 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 BCRP11274 1271 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 MSLNQ13421 630 aaPredicted RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 CHRNA2Q15822 529 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 ECM1Q16610 540 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 EAPPQ56P03 285 aaPredicted RBP13.56□□□□□ -0.24
HERC3-203ENST00000407637 CYP4F22Q6NT55 531 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 TMEM53Q6P2H8 277 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 CCDC80Q76M96 950 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 LRRC6Q86X45 466 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 TREML1Q86YW5 311 aa13.56□□□□□ -0.24
HERC3-203ENST00000407637 SNF8Q96H20 258 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms