RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 UMODL1Q5DID0 1318 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CST3P01034 146 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 C6orf222P0C671 652 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CXCL8P10145 99 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CHRNB2P17787 502 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 GJA9P57773 515 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 MFSD14CQ5VZR4 134 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 SRGAP1Q7Z6B7 1085 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 ERO1AQ96HE7 468 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 SCLT1Q96NL6 688 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 LUC7LQ9NQ29 371 aaKnown RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CREBZFQ9NS37 354 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 C1orf112Q9NSG2 853 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.85□□□□□ -0.031e-6■■■□□ 15.1
PTPRF-202ENST00000372405 CDC23Q9UJX2 597 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 V9GYY5 206 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-202ENST00000372405 ATP8B3O60423 1300 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 TRIP11Q15643 1979 aa14.85□□□□□ -0.03
PTPRF-202ENST00000372405 CITO14578 2027 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 A0A1B0GUA9 196 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 PGK1P00558 417 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 MCF2P10911 925 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 SP3Q02447 781 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 CACNB2Q08289 660 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 NCBP1Q09161 790 aaKnown RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 NCOA4Q13772 614 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 PAPD7Q5XG87 772 aaKnown RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TRAPPC11Q7Z392 1133 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TMEM130Q8N3G9 435 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TXLNBQ8N3L3 684 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 RNF10Q8N5U6 811 aaKnown RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TRIM58Q8NG06 486 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 NUB1Q9Y5A7 615 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 FAM170AA1A519 330 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 BTNL10A8MVZ5 291 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 B4GALT4O60513 344 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TACC1O75410 805 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 CALCAP01258 141 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 STAG3L1P0CL83 205 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 HOXA11P31270 313 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 NOP14P78316 857 aaKnown RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 WDR44Q5JSH3 913 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 ENOSF1Q7L5Y1 443 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 DNAJB3Q8WWF6 145 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 PCDHB18PQ96TA0 734 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 OSMRQ99650 979 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 UPF3AQ9H1J1 476 aaKnown RBP14.84□□□□□ -0.03
PTPRF-202ENST00000372405 GINS2Q9Y248 185 aa14.84□□□□□ -0.03
PTPRF-202ENST00000372405 TMCO5BA8MYB1 307 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 SEPT4O43236 478 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 ASS1P00966 412 aaKnown RBP14.83□□□□□ -0.04
PTPRF-202ENST00000372405 ELNP15502 786 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 CYP11B1P15538 503 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 ACO1P21399 889 aaKnown RBP14.83□□□□□ -0.04
PTPRF-202ENST00000372405 TNFAIP3P21580 790 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 AP3M2P53677 418 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 GALCP54803 685 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 DUOXA2Q1HG44 320 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 GNASQ5JWF2 1037 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 RPUSD2Q8IZ73 545 aaKnown RBP14.83□□□□□ -0.04
PTPRF-202ENST00000372405 TMEM40Q8WWA1 233 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 DDX1Q92499 740 aaKnown RBP14.83□□□□□ -0.04
PTPRF-202ENST00000372405 NOX5Q96PH1 765 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 KATNAL1Q9BW62 490 aa14.83□□□□□ -0.04
PTPRF-202ENST00000372405 ANO9A1A5B4 782 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 LACTBL1A8MY62 500 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 SRGAP2O75044 1071 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 TADA3O75528 432 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 TRPA1O75762 1119 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 ERLIN2O94905 339 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 NFICP08651 508 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 CLTAP09496 248 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 H2AFZP0C0S5 128 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 CCND3P30281 292 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 TFAMQ00059 246 aaKnown RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 FMO1Q01740 532 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 CUL2Q13617 745 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 SURF1Q15526 300 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 SLC10A6Q3KNW5 377 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 TAF3Q5VWG9 929 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 H2AFVQ71UI9 128 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 ZNF710Q8N1W2 664 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 CFHR5Q9BXR6 569 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 RPF1Q9H9Y2 349 aaKnown RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 INTUQ9ULD6 942 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 JRKLQ9Y4A0 524 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 PCDHGC5Q9Y5F6 944 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 C17orf102A2RUQ5 167 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 PHACTR2O75167 634 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 ADAMTS4O75173 837 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 PALMO75781 387 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 MMEP08473 750 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 DARSP14868 501 aaKnown RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 APLP1P51693 650 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 MYL6P60660 151 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 NKX3-2P78367 333 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 CXCL17Q6UXB2 119 aa14.82□□□□□ -0.04
PTPRF-202ENST00000372405 REM2Q8IYK8 340 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 GCOM2Q9BZD3 368 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-202ENST00000372405 THSD7BQ9C0I4 1608 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms