RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 AFG3L2Q9Y4W6 797 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 NWD1Q149M9 1564 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 SRGAP2BP0DMP2 458 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 KCNQ4P56696 695 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 DDR1Q08345 913 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 ZC2HC1CQ53FD0 456 aaPredicted RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 MIGA2Q7L4E1 593 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 GPD1LQ8N335 351 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 HDAC11Q96DB2 347 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 OSGEPQ9NPF4 335 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 MKRN4PQ13434 485 aaPredicted RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 CRELD2Q6UXH1 353 aaPredicted RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 NLRP9Q7RTR0 991 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 MIEF2Q96C03 454 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 BTBD6Q96KE9 485 aa20.41■□□□□ 0.86
USP48-201ENST00000308271 ZNF335Q9H4Z2 1342 aaPredicted RBP20.41■□□□□ 0.86
USP48-201ENST00000308271 GTPBP10A4D1E9 387 aaKnown RBP20.4■□□□□ 0.86
USP48-201ENST00000308271 PI4K2BG5E9Z4 385 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 ROR1Q01973 937 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 CATSPER3Q86XQ3 398 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 FAM149B1Q96BN6 582 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 LBHD1Q9BQE6 289 aaPredicted RBP20.4■□□□□ 0.86
USP48-201ENST00000308271 JMJD4Q9H9V9 463 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 SLC38A10Q9HBR0 1119 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 SMAPO00193 183 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 SCFD1Q8WVM8 642 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 THTPAQ9BU02 230 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 TIPINQ9BVW5 301 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 ATMINO43313 823 aaPredicted RBP20.4■□□□□ 0.86
USP48-201ENST00000308271 PAX7P23759 505 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 SFNP31947 248 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 RCN1Q15293 331 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 ZNF667Q5HYK9 610 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 MANSC1Q9H8J5 431 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 L3MBTL1Q9Y468 752 aa20.4■□□□□ 0.86
USP48-201ENST00000308271 SHOX2O60902 331 aaPredicted RBP20.39■□□□□ 0.86
USP48-201ENST00000308271 HNRNPH3P31942 346 aaKnown RBP20.39■□□□□ 0.86
USP48-201ENST00000308271 TEDDM1Q5T9Z0 273 aa20.39■□□□□ 0.86
USP48-201ENST00000308271 FAM196AQ6ZSG2 479 aa20.39■□□□□ 0.86
USP48-201ENST00000308271 ZBTB33Q86T24 672 aa20.39■□□□□ 0.86
USP48-201ENST00000308271 DBNDD1Q9H9R9 158 aa20.39■□□□□ 0.86
USP48-201ENST00000308271 APOEP02649 317 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 BRINP3Q76B58 766 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 GCOM2Q9BZD3 368 aaPredicted RBP20.39■□□□□ 0.85
USP48-201ENST00000308271 PCSK1NQ9UHG2 260 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 BCS1LQ9Y276 419 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 ALDH18A1P54886 795 aaKnown RBP20.39■□□□□ 0.85
USP48-201ENST00000308271 PSMC5P62195 406 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 EXOC8Q8IYI6 725 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 SENP7Q9BQF6 1050 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 VPS11Q9H270 941 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 HEY1Q9Y5J3 304 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 FOXN3O00409 490 aaPredicted RBP20.39■□□□□ 0.85
USP48-201ENST00000308271 CDO1Q16878 200 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 IQCKQ8N0W5 287 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 ACAP3Q96P50 834 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 SH3GL2Q99962 352 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 PCDHB2Q9Y5E7 798 aa20.39■□□□□ 0.85
USP48-201ENST00000308271 TAF1BQ53T94 588 aaPredicted RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 ATP8B4Q8TF62 1192 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 CCDC138Q96M89 665 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 HEXIM2Q96MH2 286 aaKnown RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 CCDC68Q9H2F9 335 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 AGLP35573 1532 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 RIPK2O43353 540 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 SPAG6O75602 509 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 RSBN1LQ6PCB5 846 aaPredicted RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 SESTD1Q86VW0 696 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 PAPOLBQ9NRJ5 636 aaKnown RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 SLC4A7Q9Y6M7 1214 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 GZMAP12544 262 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 PSMC1P62191 440 aaKnown RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 PPP6R3Q5H9R7 873 aaPredicted RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 CPA5Q8WXQ8 436 aa20.38■□□□□ 0.85
USP48-201ENST00000308271 POLR3CQ9BUI4 534 aaPredicted RBP20.38■□□□□ 0.85
USP48-201ENST00000308271 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.38■□□□□ 0.85
USP48-201ENST00000308271 SYNJ2BP-COX16A0A087WUM0 186 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 MCF2P10911 925 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 EEF1B2P24534 225 aaKnown RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 C3orf62Q6ZUJ4 267 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 AGPAT3Q9NRZ7 376 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 COX16Q9P0S2 106 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 CLRN2A0PK11 232 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 NTSR2O95665 410 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 CRKP46108 304 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 ERFP50548 548 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 ZNF200P98182 395 aaPredicted RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 STX3Q13277 289 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 NKX1-1Q15270 411 aaPredicted RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 CNGA3Q16281 694 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 IPO11Q9UI26 975 aaKnown RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 CAMTA2O94983 1202 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 UBTFL6P0CB48 400 aaPredicted RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 BCAR1P56945 870 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 EIF3EP60228 445 aaKnown RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 THOC5Q13769 683 aaKnown RBP20.37■□□□□ 0.85
USP48-201ENST00000308271 C11orf63Q6NUN7 778 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 FAM53CQ9NYF3 392 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 RALAP11233 206 aa20.37■□□□□ 0.85
USP48-201ENST00000308271 GEMIN4P57678 1058 aaKnown RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms