RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KCNH4Q9UQ05 1017 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 SOWAHDA6NJG2 315 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 RASA4BC9J798 803 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 CHUKO15111 745 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 RASA4O43374 803 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 FKBP9O95302 570 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 CACNB1Q02641 598 aaPredicted RBP12.69□□□□□ -0.38
PCF11-201ENST00000298281 FKBP9P1Q75LS8 142 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 TTLL6Q8N841 843 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 RTL3Q8N8U3 475 aaKnown RBP12.69□□□□□ -0.38
PCF11-201ENST00000298281 ELMO2Q96JJ3 720 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 PARD6BQ9BYG5 372 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 ZNF341Q9BYN7 854 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 SIK2Q9H0K1 926 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 ASAP1Q9ULH1 1129 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 PKP3Q9Y446 797 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 N6AMT1Q9Y5N5 214 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 LRRC14BA6NHZ5 514 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 PRRG1O14668 218 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 UPP2O95045 317 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 RALAP11233 206 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 YWHAQP27348 245 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 SDC4P31431 198 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 PRELPP51888 382 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 BBS7Q8IWZ6 715 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 CLYBLQ8N0X4 340 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 MOSPD2Q8NHP6 518 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 PYCARDQ9ULZ3 195 aa12.69□□□□□ -0.38
PCF11-201ENST00000298281 UBE4BO95155 1302 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 ZNF235Q14590 738 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 CYP4F11Q9HBI6 524 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 GID8Q9NWU2 228 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 SYBUQ9NX95 663 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 DDX56Q9NY93 547 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 PVALEFA0A1B0GWK0 134 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 ZBTB5O15062 677 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 RGS5O15539 181 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 MFAP3LO75121 409 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 ERVK-10P10266 1014 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 KRT31Q15323 416 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 MAPRE2Q15555 327 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 ERFEQ4G0M1 354 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 RMDN3Q96TC7 470 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 MUC3BQ9H195 1237 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 SPTLC3Q9NUV7 552 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 MRGBPQ9NV56 204 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 PFASO15067 1338 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 WDR19Q8NEZ3 1342 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 NEO1Q92859 1461 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 CAMK1Q14012 370 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 EPM2AIP1Q7L775 607 aaPredicted RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 CCDC60Q8IWA6 550 aaPredicted RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 SH3TC2Q8TF17 1288 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 RNF103O00237 685 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 GGPS1O95749 300 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 USP17L8P0C7I0 530 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 KIZQ2M2Z5 673 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 EXOSC4Q9NPD3 245 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 BFARQ9NZS9 450 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 DNAJC12Q9UKB3 198 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.68□□□□□ -0.38
PCF11-201ENST00000298281 DTNBO60941 627 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 RAD17O75943 681 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 SLC27A3Q5K4L6 730 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 C11orf57Q6ZUT1 292 aaPredicted RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 NSUN6Q8TEA1 469 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 VPS50Q96JG6 964 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 PRKD2Q9BZL6 878 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 MTIF3Q9H2K0 278 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 PKD2L2Q9NZM6 624 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 HEG1Q9ULI3 1381 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 KIF1BO60333 1816 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 PSMA4P25789 261 aaKnown RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 MASTLQ96GX5 879 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 INTS13Q9NVM9 706 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 PNMA8BQ9ULN7 279 aaPredicted RBP12.68□□□□□ -0.38
PCF11-201ENST00000298281 SPATA2Q9UM82 520 aa12.68□□□□□ -0.38
PCF11-201ENST00000298281 DEAF1O75398 565 aaPredicted RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 HIST1H2AGP0C0S8 130 aaPredicted RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 HIST1H2ADP20671 130 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 ARL3P36405 182 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 DENND6AQ8IWF6 608 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 HIST1H2AHQ96KK5 128 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 HIST1H2AJQ99878 128 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 C17orf80Q9BSJ5 609 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 H2AFJQ9BTM1 129 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 IP6K2Q9UHH9 426 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 MOCS2O96007 188 aaPredicted RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 MMEP08473 750 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 RXRBP28702 533 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 RPS7P62081 194 aaKnown RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 SH3GL1Q99961 368 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 IGSF1Q8N6C5 1336 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 PLEKHG2Q9H7P9 1386 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 PDAP1Q13442 181 aaKnown RBP12.67□□□□□ -0.38
PCF11-201ENST00000298281 TTLL4Q14679 1199 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 LPIN1Q14693 890 aa12.67□□□□□ -0.38
PCF11-201ENST00000298281 HEATR6Q6AI08 1181 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 203.5 ms