RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NME8Q8N427 588 aa24.42■■□□□ 1.5
CDX1-201ENST00000231656 ACO2Q99798 780 aaKnown RBP24.42■■□□□ 1.5
CDX1-201ENST00000231656 SYT11Q9BT88 431 aa24.42■■□□□ 1.5
CDX1-201ENST00000231656 HAPLN2Q9GZV7 340 aa24.42■■□□□ 1.5
CDX1-201ENST00000231656 LRRIQ3A6PVS8 624 aaPredicted RBP24.41■■□□□ 1.5
CDX1-201ENST00000231656 BTNL10A8MVZ5 291 aa24.41■■□□□ 1.5
CDX1-201ENST00000231656 ZSCAN20P17040 1043 aaPredicted RBP24.41■■□□□ 1.5
CDX1-201ENST00000231656 ARHGEF19Q8IW93 802 aa24.41■■□□□ 1.5
CDX1-201ENST00000231656 EPC1Q9H2F5 836 aa24.41■■□□□ 1.5
CDX1-201ENST00000231656 CDHR5Q9HBB8 845 aa24.41■■□□□ 1.5
CDX1-201ENST00000231656 PRMT7Q9NVM4 692 aaPredicted RBP24.41■■□□□ 1.5
CDX1-201ENST00000231656 GINS2Q9Y248 185 aa24.41■■□□□ 1.5
CDX1-201ENST00000231656 A0A1W2PQ45 241 aaPredicted RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 A0A1W2PQY0 241 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 CTAGE15A4D2H0 777 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 KBTBD13C9JR72 458 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 DDX3XO00571 662 aaKnown RBP eCLIP24.4■■□□□ 1.5
CDX1-201ENST00000231656 B4GALT5O43286 388 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 SRGAP2O75044 1071 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 LRRN2O75325 713 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 CTAGE8P0CG41 777 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 HSPA1AP0DMV8 641 aaKnown RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 HSPA1BP0DMV9 641 aaKnown RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 PRPF4BQ13523 1007 aaKnown RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 BMS1Q14692 1282 aaKnown RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 FBXO46Q6PJ61 603 aaPredicted RBP24.4■■□□□ 1.5
CDX1-201ENST00000231656 CTAGE6Q86UF2 777 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 SERINC5Q86VE9 423 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 VPS36Q86VN1 386 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 CTAGE4Q8IX94 777 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 ANKFY1Q9P2R3 1169 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 SNX12Q9UMY4 172 aa24.4■■□□□ 1.5
CDX1-201ENST00000231656 BUB1O43683 1085 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 TOM1L1O75674 476 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 CTCFP49711 727 aaPredicted RBP24.39■■□□□ 1.5
CDX1-201ENST00000231656 TUBB4BP68371 445 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 AMHR2Q16671 573 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 ALKBH5Q6P6C2 394 aaKnown RBP24.39■■□□□ 1.5
CDX1-201ENST00000231656 TSHZ1Q6ZSZ6 1077 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 SLC30A5Q8TAD4 765 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 CCDC127Q96BQ5 260 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 GCOM2Q9BZD3 368 aaPredicted RBP24.39■■□□□ 1.5
CDX1-201ENST00000231656 TMEM8AQ9HCN3 771 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 AGO2Q9UKV8 859 aaKnown RBP24.39■■□□□ 1.5
CDX1-201ENST00000231656 PHF24Q9UPV7 400 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 COQ4Q9Y3A0 265 aa24.39■■□□□ 1.5
CDX1-201ENST00000231656 PRLRP16471 622 aa24.39■■□□□ 1.49
CDX1-201ENST00000231656 GTF2H1P32780 548 aa24.39■■□□□ 1.49
CDX1-201ENST00000231656 PTPN11Q06124 597 aaPredicted RBP24.39■■□□□ 1.49
CDX1-201ENST00000231656 PTGISQ16647 500 aa24.39■■□□□ 1.49
CDX1-201ENST00000231656 ARHGAP44Q17R89 818 aa24.39■■□□□ 1.49
CDX1-201ENST00000231656 LNX1Q8TBB1 728 aaPredicted RBP24.39■■□□□ 1.49
CDX1-201ENST00000231656 OSMRQ99650 979 aa24.39■■□□□ 1.49
CDX1-201ENST00000231656 UBE2TQ9NPD8 197 aaPredicted RBP24.39■■□□□ 1.49
CDX1-201ENST00000231656 A0A0B4J269 797 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 FOXN3O00409 490 aaPredicted RBP24.38■■□□□ 1.49
CDX1-201ENST00000231656 DNM1LO00429 736 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 KIAA0391O15091 583 aaKnown RBP24.38■■□□□ 1.49
CDX1-201ENST00000231656 CLDN3O15551 220 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 EXTL3O43909 919 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 MATR3P43243 847 aaKnown RBP eCLIP24.38■■□□□ 1.49
CDX1-201ENST00000231656 ATF7IP2Q5U623 682 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 KRT39Q6A163 491 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 SEMA4DQ92854 862 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 PTPRHQ9HD43 1115 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 STARD7Q9NQZ5 370 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 OGDHLQ9ULD0 1010 aa24.38■■□□□ 1.49
CDX1-201ENST00000231656 ABLIM1O14639 778 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 CCDC172P0C7W6 258 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 PROZP22891 400 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 CLCN6P51797 869 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 WNT8BQ93098 351 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 POP1Q99575 1024 aaKnown RBP24.37■■□□□ 1.49
CDX1-201ENST00000231656 FAM213AQ9BRX8 229 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 MSTO1Q9BUK6 570 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 KIAA1586Q9HCI6 787 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 TOPORSQ9NS56 1045 aaPredicted RBP24.37■■□□□ 1.49
CDX1-201ENST00000231656 PCDHGC5Q9Y5F6 944 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 DARSP14868 501 aaKnown RBP24.37■■□□□ 1.49
CDX1-201ENST00000231656 TMEM132AQ24JP5 1023 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 USP37Q86T82 979 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 ZNF333Q96JL9 665 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 MMS19Q96T76 1030 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 TCHPQ9BT92 498 aa24.37■■□□□ 1.49
CDX1-201ENST00000231656 CNTNAP2Q9UHC6 1331 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 ZNF233A6NK53 670 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 ZNF185O15231 689 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 ERLIN2O94905 339 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 FGFR4P22455 802 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 EIF4BP23588 611 aaKnown RBP24.36■■□□□ 1.49
CDX1-201ENST00000231656 CRYBB1P53674 252 aaPredicted RBP24.36■■□□□ 1.49
CDX1-201ENST00000231656 CKAP4Q07065 602 aaKnown RBP24.36■■□□□ 1.49
CDX1-201ENST00000231656 MCL1Q07820 350 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 PKN2Q16513 984 aaKnown RBP24.36■■□□□ 1.49
CDX1-201ENST00000231656 MPZL3Q6UWV2 235 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 RPAINQ86UA6 219 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 RSPH3Q86UC2 560 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 SLC43A3Q8NBI5 491 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 TMEM40Q8WWA1 233 aa24.36■■□□□ 1.49
CDX1-201ENST00000231656 TLR10Q9BXR5 811 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms