RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OASLQ15646 514 aaKnown RBP14.02□□□□□ -0.17
USP40-208ENST00000450966 FASTKD5Q7L8L6 764 aaKnown RBP14.02□□□□□ -0.17
USP40-208ENST00000450966 COL23A1Q86Y22 540 aaPredicted RBP14.02□□□□□ -0.17
USP40-208ENST00000450966 NSUN7Q8NE18 718 aaKnown RBP14.02□□□□□ -0.17
USP40-208ENST00000450966 ZNF555Q8NEP9 628 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 SLC38A10Q9HBR0 1119 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 TMBIM4Q9HC24 238 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 HESX1Q9UBX0 185 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 STAP2Q9UGK3 403 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 SRP68Q9UHB9 627 aaKnown RBP14.02□□□□□ -0.17
USP40-208ENST00000450966 FAM47DPA6NHR8 397 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 SAC3D1A6NKF1 404 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 LZTS3O60299 673 aaPredicted RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 UBOX5O94941 541 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TARSP26639 723 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 RUNX1T1Q06455 604 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TRIM25Q14258 630 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 MORF4L2Q15014 288 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TSC22D1Q15714 1073 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 JADE3Q92613 823 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 PGBD1Q96JS3 809 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 IDH3BO43837 385 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 BCL10O95999 233 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 PRLP01236 227 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 HP1BP3Q5SSJ5 553 aaPredicted RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 GALNT15Q8N3T1 639 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 SCG3Q8WXD2 468 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 ZNF184Q99676 751 aaPredicted RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 HERC5Q9UII4 1024 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 STX7O15400 261 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 CDH16O75309 829 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 SASH3O75995 380 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TRAPPC10P48553 1259 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 FMR1NBQ8N0W7 255 aaPredicted RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 GALNT4Q8N4A0 578 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 FANCBQ8NB91 859 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 PSPC1Q8WXF1 523 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 FANCEQ9HB96 536 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 PCDHA12Q9UN75 941 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TNKSO95271 1327 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 AP3B1O00203 1094 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 GGPS1O95749 300 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 RAB15P59190 212 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 IGBP1P78318 339 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 DDX47Q9H0S4 455 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 ISCUQ9H1K1 167 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 KPNA7A9QM74 516 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 AFPP02771 609 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 CLK1P49759 484 aaKnown RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 ITGA9Q13797 1035 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 LRRC24Q50LG9 513 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 ZBTB41Q5SVQ8 909 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 SUSD4Q5VX71 490 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 LRRC74BQ6ZQY2 392 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 RAB44Q7Z6P3 723 aaPredicted RBP14.01□□□□□ -0.17
USP40-208ENST00000450966 DCAF4Q8WV16 495 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 TSSK1BQ9BXA7 367 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 NPHS2Q9NP85 383 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 C1orf112Q9NSG2 853 aa14.01□□□□□ -0.17
USP40-208ENST00000450966 H7C1W4 665 aa14□□□□□ -0.17
USP40-208ENST00000450966 PFDN6O15212 129 aa14□□□□□ -0.17
USP40-208ENST00000450966 CCNE1P24864 410 aa14□□□□□ -0.17
USP40-208ENST00000450966 PHKA1P46020 1223 aa14□□□□□ -0.17
USP40-208ENST00000450966 EN1Q05925 392 aaPredicted RBP14□□□□□ -0.17
USP40-208ENST00000450966 TRMT5Q32P41 509 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 ZCCHC7Q8N3Z6 543 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 STX19Q8N4C7 294 aa14□□□□□ -0.17
USP40-208ENST00000450966 RDH13Q8NBN7 331 aa14□□□□□ -0.17
USP40-208ENST00000450966 AGAP11Q8TF27 550 aa14□□□□□ -0.17
USP40-208ENST00000450966 ALKBH8Q96BT7 664 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 RNPEPL1Q9HAU8 725 aa14□□□□□ -0.17
USP40-208ENST00000450966 ZNF446Q9NWS9 450 aa14□□□□□ -0.17
USP40-208ENST00000450966 STK17AQ9UEE5 414 aa14□□□□□ -0.17
USP40-208ENST00000450966 RABL2BQ9UNT1 228 aa14□□□□□ -0.17
USP40-208ENST00000450966 CDC27P30260 824 aa14□□□□□ -0.17
USP40-208ENST00000450966 CYP2J2P51589 502 aa14□□□□□ -0.17
USP40-208ENST00000450966 WASHC5Q12768 1159 aa14□□□□□ -0.17
USP40-208ENST00000450966 EFTUD2Q15029 972 aaKnown RBP eCLIP14□□□□□ -0.17
USP40-208ENST00000450966 CCDC85BQ15834 202 aaPredicted RBP14□□□□□ -0.17
USP40-208ENST00000450966 PCGF5Q86SE9 256 aa14□□□□□ -0.17
USP40-208ENST00000450966 REXO1L1PQ8IX06 675 aa14□□□□□ -0.17
USP40-208ENST00000450966 ATP8B4Q8TF62 1192 aa14□□□□□ -0.17
USP40-208ENST00000450966 NACC1Q96RE7 527 aa14□□□□□ -0.17
USP40-208ENST00000450966 KLHL31Q9H511 634 aa14□□□□□ -0.17
USP40-208ENST00000450966 UBE4BO95155 1302 aa14□□□□□ -0.17
USP40-208ENST00000450966 ADCY9O60503 1353 aa14□□□□□ -0.17
USP40-208ENST00000450966 PRR23AA6NEV1 266 aa14□□□□□ -0.17
USP40-208ENST00000450966 CYP27B1O15528 508 aa14□□□□□ -0.17
USP40-208ENST00000450966 ZBTB7AO95365 584 aa14□□□□□ -0.17
USP40-208ENST00000450966 ALOX5P09917 674 aa14□□□□□ -0.17
USP40-208ENST00000450966 HSPA1AP0DMV8 641 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 HSPA1BP0DMV9 641 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 LBRQ14739 615 aaKnown RBP14□□□□□ -0.17
USP40-208ENST00000450966 ZNF280DQ6N043 979 aa14□□□□□ -0.17
USP40-208ENST00000450966 IRX2Q9BZI1 471 aaPredicted RBP14□□□□□ -0.17
USP40-208ENST00000450966 HMG20AQ9NP66 347 aa14□□□□□ -0.17
USP40-208ENST00000450966 CYP39A1Q9NYL5 469 aa14□□□□□ -0.17
USP40-208ENST00000450966 hCG_1642624A0A1W2PR95 340 aa14□□□□□ -0.17
USP40-208ENST00000450966 NPTXRO95502 500 aa14□□□□□ -0.17
USP40-208ENST00000450966 ARL4CP56559 192 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms